Table 4.
Nucleotide content and gene count levels of the genome
| Attribute | Value | % of total |
|---|---|---|
| Genome size (bp) | 4,385,518 | 100.00 |
| DNA coding (bp) | 3,954,282 | 90.17 |
| DNA G + C (bp) | 2,876,511 | 65.59 |
| DNA scaffolds | 1 | 100.00 |
| Total genes | 4,194 | 100.00 |
| Protein coding genes | 4,146 | 98.86 |
| Pseudo genes | 2 | 0.05 |
| RNA genes | 48 | 1.14 |
| Genes in internal clusters | NA | NA |
| Genes with function prediction | 2,885 | 68.79 |
| Genes assigned to COGs | 2,892 | 69.74 |
| Genes with Pfam domains | 3,347 | 79.80 |
| Genes with signal peptides | 233 | 5.56 |
| Genes coding transmembrane helices | 810 | 19.31 |
| CRISPR repeats | 4 | 0.10 |
The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome
Also includes 1 pseudogene