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Statistics for SNPs based on the two different methods
| Method of SNPcalling | Raw SNPs | Clean SNPs | χ 2 < 15 |
|---|---|---|---|
| DISRa | 181,770 | 7457 | 3282 |
| Based on reference genome | 7,343,419 | 8664 | 5286 |
Shown are the number of raw SNPs, the number of SNPs remained after filtering and the number of SNPs by a Chi square test
aDe novo identification of SNP by RAD-seq
