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Properties of stem loops Variable Region #3
| Species/Sequence | stem loop | Base pairs | TATAATATA near loop | Delta G |
|---|---|---|---|---|
| Human | 1 | 109 | No | −51 kcal/mol |
| 2 | 120 | Yes | −52 kcal/mol | |
| Chimpanzee | 1 | 106 | Yes | −44 kcal/mol. |
| Breakpoint | ||||
| Type C | 1 | 294 | Yes | −319 kcal/mol |
| Random | ||||
| Sequence | 1a | 123 | No | −19 kcal/mol |
aStem loop shown in Additional file 6: Figure S5
