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. 2015 Oct 15;10(10):e0141036. doi: 10.1371/journal.pone.0141036

Table 2. Cancer cell lines expressing increased genomic Usmg5 copy number in Oncomine cancer genomics database and Cancer Cell Line Encyclopedia, CCLE.

Classification Cancer type Cell line DNA copy number Oncomine dataset/ CCLE
Bone Osteosarcoma 143B 2,76 CCLE [31]
Brain Brain gioblastoma A-172 3,48 Berouchim brain [35]
Cerebral glioblastoma LN-18 2,78 Berouchim brain [35]
Breast Breast adenocarcinoma MCF7 2,62 Nicolsky Breast [32]
Breast carcinoma SUM-52PE 3,60
3,42
Nicolsky Breast [32]
Chin breast2 [65]
CAL-51 3,28 Hu CellLine2 [66]
MDA-MB-468 2,96 Hu CellLine2 [66]
CAL-120 2,81 Hu CellLine2 [66]
Hs 578T 2,74 Hu CellLine2 [66]
MDA-MB-361 2,72 Hu CellLine2 [66]
HCC1806 2,62 CCLE [31]
Ductal breast carcinoma T-47D 3,18 Nicolsky Breast [32]
MFM-223 2,85 Nicolsky Breast [32]
Squamous cell breast carcinoma, Acantholytic variant HCC1806 2,88 Hu CellLine2 [66]
Central nervous system Cannabinoid receptor CB1 2,69 CCLE [31]
Glioma KSN60 2,59 CCLE [31]
Endometrium Endometrial adenocarcinoma JHUEM2 2,60 CCLE [31]
AN3CA 2,60
2,59
CCLE [31]
Rothenberg CellLine [38]
Esophagus Eesophageal adenocarcinoma JHESOAD1 2,61 CCLE [31]
Barrett's adenocarcinoma OE33 2,77
2,65
CCLE [31]
Wooster CellLine [N/A]
Gallbladder Biliary tract cancer SNU478 3,49 CCLE [31]
Gastric Cecum adenocarcinoma LS411N 2,70 Lu colorectal [67]
NCI-H498 2,61 Lu colorectal [67]
NCI-H747 2,60 Lu colorectal [67]
Colon adenocarcinoma SW620 2,88 Lu colorectal [67]
HCT-15 2,77 Lu colorectal [67]
LS180 2,72 Lu colorectal [67]
Colon carcinoma HCT116 2,94
2,78
2,78
2,77
CCLE [31]
Berouchim multicancer [34]
Lu colorectal [67]
Rothenberg CellLine [38]
Gastric cancer Hs 746T 3,54
2,90
Rothenberg CellLine [38]
Palanisamy gastric [N/A]
NCI-N87 3,41 Palanisamy gastric [N/A]
KATO111 3,34 Palanisamy gastric [N/A]
YCC-16 3,21 Palanisamy gastric [N/A]
HUG1N 3,02 CCLE [31]
YCC-9 3,00 Palanisamy gastric [N/A]
YCC-6 2,85 Palanisamy gastric [N/A]
SNU520 2,69 CCLE [31]
Gastric tubular adenocarcinoma MKN74 2,74
2,57
CCLE [31]
Rothenberg CellLine [38]
Gastrointestinal stromal tumor GIST 882X 2,97 Berouchim multicancer [34]
Signet ring cell gastric adenocarcinoma SNU-668 2,93
2,80
CCLE [31]
Barretina CellLine 2 [31]
Hematopoietic tissue Acute Myeloid Leukemia CMK115 2,90 CCLE [31]
KASUMI1 2,85 CCLE [31]
CMK 2,67 CCLE [31]
M2-type of Myeloid Leukemia KASUMI6 2,78 CCLE [31]
Blast phase cronic myelogenous leukemia MOLM6 2,78
2,60
CCLE [31]
Barretina CellLine 2 [31]
Chronic myeloid leukemia BV173 2,55 CCLE [31]
Leukemia NCO2 2,53 CCLE [31]
Erythroleukemia TF-1 2,60 Barretina CellLine 2 [31]
Kidney Clear cell renal carcinoma SNU-1272 3,13
2,77
CCLE [31]
Barretina CellLine 2 [31]
Renal carcinoma UOK101 2,87 CCLE [31]
Human proximal tubular cell line, immortalized HK2 2,67 CCLE [31]
Renal adenocarcinoma ACHN 2,55 CCLE [31]
Liver Hepatocellular adenocarcinoma SNU-398 2,84
2,75
2,72
2,59
CCLE [31]
Rothenberg CellLine [38]
Wooster CellLine [N/A]
Barretina CellLine 2 [31]
Hepatocellular carcinoma LI7 3,40 CCLE [31]
C3A 2,62 CCLE [31]
Lung Lung adenocarcinoma NCI-HI435 3,15 CCLE [31]
NCI-H1775 2,73
2,62
CCLE [31]
Lu lung [67]
NCI-H1993 2,79
2,72
2,62
Lu lung [67]
Sos CellLine [69]
Wooster CellLine [N/A]
NCI-H1563 2,74
2,68
CCLE [31]
Lu lung [67]
NCI-H1838 2,63 Lu lung [67]
NCI-H1755 2,86
2,58
Sos CellLine [69]
Rothenberg CellLine [38]
VMRC-LCD 2,67
2,57
CCLE [31]
Rothenberg CellLine [38]
LU65A 2,75 Rothenberg CellLine [38]
Large cell lung carcinoma Calu-6 2,59 Lu lung [67]
Giant cell lung carcinoma LU65B 3,03 Rothenberg CellLine [38]
Small cell lung carcinoma NCI-H510 2,83 CCLE [31]
DMS53 2,69 Olejniczak CellLine 2 [68]
SBC-5 2,69
2,64
CCLE [31]
Rothenberg CellLine [38]
DMS114 2,55 CCLE [31]
Non-small cell lung carcinoma NCI-H1581 2,67 CCLE [31]
Squamous cell lung carcinoma HCC1897 3,53 CCLE [31]
NCI-HI703 2,63
2,61
CCLE [31]
Wooster CellLine [N/A]
Lung carcinoma EPLC272H 2,56 CCLE [31]
Lymphoid tissue Anaplastic large cell lymphoma Ki-JK 3,21
2,80
CCLE [31]
Barretina CellLine 2 [31]
Non-Hodking B cell Lymphoma JM1 2,79 CCLE [31]
Non-Hodking T cell Lymphoma SR786 2,78 CCLE [31]
SUDHL1 2,65 CCLE [31]
Splenic marginal zone B-cell lymphoma SLVL 2,63 Rothenberg CellLine [38]
Ovarian Ovarian adenocarcinoma TOV21G 2,98 CCLE [31]
OVK18 2,89 CCLE [31]
CAO V3 2,62 CCLE [31]
Ovarian clear cell adenocarcinoma OVTOKO 4,04
3,20
CCLE [31]
Barretina CellLine 2 [31]
Ovarian mucinous custadenocarcinoma MCAS 3,05
2,92
2,68
CCLE [31]
Rothenberg CellLine [38]
Barretina CellLine 2 [31]
Ovarian carcinoma OVSAHO 2,72 CCLE [31]
Ovarian carcinoma OVK12 2,65 Barretina CellLine 2 [31]
Ovarian granulosa cell tumor COV434 2,80 CCLE [31]
Pancreas Ampulla of Vater adenocarcinoma SNU-478 3,08 Barretina CellLine 2 [31]
Pancreatic adenocarcinoma PSN1 2,75
2,61
CCLE [31]
Barretina CellLine 2 [31]
PANC1 2,64
2,53
CCLE [31]
Barretina CellLine2 [31]
PK1 2,53 CCLE [31]
Panreatic carcinoma PK45H 2,63 CCLE [31]
YAPC 2,62 CCLE [31]
Skin Cutaneous melanoma A7 2,81 Wooster CellLine [N/A]
Melanoma IGR1 2,63 CCLE [31]
Squamous cell adenocarcinoma HCC95 2,78 Sos CellLine [69]
HCC-15 2,59 Sos CellLine [69]
Thyroid Follicular thyroid carcinoma ML1 2,53 CCLE [31]

N/A indicating not available