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. 2015 Oct 15;16:331. doi: 10.1186/s12859-015-0766-y

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© Ma et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — An example of spurious breakpoint and alternative one. The shown region in the main window is base pairs 45948669-45966575 on chromosome 5. The vertical left line (45955101, in purple) in the main window delimits the spurious breakpoint call (Chr5: 45955101), and the vertical right line (45955840, in red) is the alternative breakpoint identified through manual review. The read alignments for the spurious breakpoint in the original call and the alternative breakpoint identified through manual review are displayed in the two separate pop-up windows