Table 2.
LincRNAs acting as miRNA decoys
| zma-miRNAsa | Transcript b | start-endc | MFEperfectd | MFEsitee | MFEratiof |
|---|---|---|---|---|---|
| zma-miR156a-3p | Li_TCONS_00044513 | 70-90 | −41.7 | −27.3 | 0.654676258992806 |
| zma-miR156b-3p | Li_TCONS_00088709 | 477-501 | −40.8 | −28.28 | 0.693137254901961 |
| zma-miR159a-5p | Li_TCONS_00096446 | 109-129 | −36.4 | −23.8 | 0.653846153846154 |
| zma-miR159b-5p:zma-miR159k-5p:zma-miR159j-5p | Boerner_Z27kG1_11801 | 143-162 | −35.3 | −23.7 | 0.671388101983003 |
| zma-miR159b-5p:zma-miR159k-5p:zma-miR159j-5p | Boerner_Z27kG1_16385 | 143-162 | −35.3 | −23.7 | 0.671388101983003 |
| zma-miR159b-5p:zma-miR159k-5p:zma-miR159j-5p | Li_TCONS_00012571 | 604-627 | −35.3 | −23.4 | 0.662889518413598 |
| zma-miR159d-3p:zma-miR159c-3p | zhang_TCONS_00029225 | 1271-1291 | −40.1 | −27.3 | 0.680798004987531 |
| zma-miR159e-3p | Boerner_Z27kG1_01522 | 880-899 | −38.2 | −25.2 | 0.659685863874345 |
| zma-miR159e-3p | Boerner_Z27kG1_22626 | 192-211 | −38.2 | −25.3 | 0.662303664921466 |
| zma-miR159e-3p | Li_TCONS_00012087 | 121-141 | −38.2 | −26.9 | 0.704188481675393 |
| zma-miR159e-3p | zhang_TCONS_00056321 | 208-228 | −38.2 | −28.48 | 0.745549738219895 |
| zma-miR159e-5p | Li_TCONS_00071752 | 34-50 | −41.8 | −27.5 | 0.657894736842105 |
| zma-miR159g-3p | Boerner_Z27kG1_05478 | 507-526 | −37.6 | −25.3 | 0.672872340425532 |
| zma-miR159g-3p | Boerner_Z27kG1_09702 | 320-340 | −37.6 | −27.7 | 0.736702127659574 |
| zma-miR159g-5p:zma-miR159h-5p:zma-miR159i-5p | Boerner_Z27kG1_11801 | 143-162 | −37.8 | −27.2 | 0.719576719576720 |
| zma-miR159g-5p:zma-miR159h-5p:zma-miR159i-5p | Boerner_Z27kG1_16385 | 143-162 | −37.8 | −27.2 | 0.719576719576720 |
| zma-miR159g-5p:zma-miR159h-5p:zma-miR159i-5p | Li_TCONS_00012571 | 604-627 | −37.8 | −27.3 | 0.722222222222222 |
| zma-miR159g-5p:zma-miR159h-5p:zma-miR159i-5p | Li_TCONS_00059484 | 191-211 | −37.8 | −24.88 | 0.658201058201058 |
| zma-miR160c-3p | Boerner_Z27kG1_01735 | 212-233 | −41.5 | −27.4 | 0.660240963855422 |
| zma-miR160d-3p | Boerner_Z27kG1_01291 | 1077-1102 | −44.4 | −30.1 | 0.677927927927928 |
| zma-miR160f-3p | Li_TCONS_00062998 | 301-321 | −46.8 | −31 | 0.662393162393162 |
| zma-miR162-5p | Li_TCONS_00020299 | 306-326 | −40.6 | −27.1 | 0.667487684729064 |
| zma-miR164b-3p | Boerner_Z27kG1_17564 | 219-235 | −39.3 | −27.3 | 0.694656488549618 |
| zma-miR164b-3p | Li_TCONS_00023489 | 142-160 | −39.3 | −27.5 | 0.699745547073791 |
| zma-miR164b-3p | Li_TCONS_00023490 | 142-160 | −39.3 | −27.5 | 0.699745547073791 |
| zma-miR164b-3p | Li_TCONS_00052687 | 45-68 | −39.3 | −32.1 | 0.816793893129771 |
| zma-miR164b-3p | Li_TCONS_00062623 | 8-31 | −39.3 | −30.08 | 0.765394402035623 |
| zma-miR164c-3p:zma-miR164h-3p | Li_TCONS_00048247 | 268-291 | −39.7 | −26.1 | 0.657430730478589 |
| zma-miR164c-5p:zma-miR164a-5p:zma-miR164b-5p:zma-miR164g-5p:zma-miR164d-5p | Li_TCONS_00011715 | 349-371 | −44.3 | −32.8 | 0.740406320541761 |
| zma-miR164c-5p:zma-miR164a-5p:zma-miR164b-5p:zma-miR164g-5p:zma-miR164d-5p | Li_TCONS_00031357 | 1-20 | −44.3 | −30.9 | 0.697516930022573 |
| zma-miR164f-5p | Li_TCONS_00011715 | 349-371 | −44.3 | −34.1 | 0.769751693002257 |
| zma-miR164f-5p | Li_TCONS_00031357 | 1-20 | −44.3 | −30.3 | 0.683972911963883 |
| zma-miR164h-5p | Li_TCONS_00011715 | 349-371 | −43.6 | −31.1 | 0.713302752293578 |
| zma-miR164h-5p | Li_TCONS_00031357 | 1-20 | −43.6 | −31.1 | 0.713302752293578 |
| zma-miR166g-5p | Li_TCONS_00014574 | 19-43 | −37.9 | −25.6 | 0.675461741424802 |
| zma-miR166n-5p | Boerner_Z27kG1_07658 | 926-945 | −40.9 | −28.9 | 0.706601466992665 |
| zma-miR166n-5p | Boerner_Z27kG1_17312 | 433-455 | −40.9 | −29.2 | 0.713936430317848 |
| zma-miR167e-3p | zhang_TCONS_00077767 | 493-515 | −38.6 | −25.5 | 0.660621761658031 |
| zma-miR167f-3p | Boerner_Z27kG1_02792 | 196-221 | −43.5 | −28.3 | 0.650574712643678 |
| zma-miR167j-3p | Li_TCONS_00096821 | 264-283 | −32.4 | −21.48 | 0.662962962962963 |
| zma-miR169i-3p:zma-miR169j-3p:zma-miR169k-3p | Boerner_Z27kG1_15115 | 783-800 | −36.5 | −26.1 | 0.715068493150685 |
| zma-miR169i-3p:zma-miR169j-3p:zma-miR169k-3p | Li_TCONS_00032815 | 227-244 | −36.5 | −25 | 0.684931506849315 |
| zma-miR169i-3p:zma-miR169j-3p:zma-miR169k-3p | Li_TCONS_00091165 | 524-540 | −36.5 | −24.2 | 0.663013698630137 |
| zma-miR169l-5p | Li_TCONS_00023317 | 7-30 | −40.2 | −27.04 | 0.672636815920398 |
| zma-miR169m-3p | Li_TCONS_00034371 | 236-259 | −36.2 | −24.8 | 0.685082872928177 |
| zma-miR169n-3p | Li_TCONS_00064018 | 104-127 | −40.4 | −26.88 | 0.665346534653465 |
| zma-miR169n-3p | Li_TCONS_00064018 | 129-152 | −40.4 | −26.88 | 0.665346534653465 |
| zma-miR169n-3p | Li_TCONS_00096947 | 82-105 | −40.4 | −26.88 | 0.665346534653465 |
| zma-miR169o-3p | Boerner_Z27kG1_03458 | 184-205 | −40.8 | −29.1 | 0.713235294117647 |
| zma-miR169q-3p | Boerner_Z27kG1_03458 | 189-205 | −39.5 | −26.5 | 0.670886075949367 |
| zma-miR169q-3p | Li_TCONS_00041379 | 300-317 | −39.5 | −26.3 | 0.665822784810127 |
| zma-miR169q-3p | Li_TCONS_00064018 | 104-127 | −39.5 | −27.4 | 0.693670886075949 |
| zma-miR169q-3p | Li_TCONS_00064018 | 129-152 | −39.5 | −27.4 | 0.693670886075949 |
| zma-miR169q-3p | Li_TCONS_00096947 | 82-105 | −39.5 | −27.4 | 0.693670886075949 |
| zma-miR169q-3p | zhang_TCONS_00028666 | 216-234 | −39.5 | −26.9 | 0.681012658227848 |
| zma-miR169q-3p | zhang_TCONS_00056448 | 36-59 | −39.5 | −25.7 | 0.650632911392405 |
| zma-miR171a-5p | Boerner_Z27kG1_20123 | 1069-1091 | −35.8 | −23.4 | 0.653631284916201 |
| zma-miR171f-5p | Boerner_Z27kG1_04122 | 35-55 | −38.8 | −25.4 | 0.654639175257732 |
| zma-miR171f-5p | Li_TCONS_00027786 | 158-178 | −38.8 | −26.1 | 0.672680412371134 |
| zma-miR171f-5p | Li_TCONS_00096642 | 338-357 | −38.8 | −25.7 | 0.662371134020619 |
| zma-miR171h-3p:zma-miR171k-3p | Boerner_Z27kG1_10860 | 672-691 | −37.4 | −24.7 | 0.660427807486631 |
| zma-miR171h-3p:zma-miR171k-3p | Li_TCONS_00082779 | 252-270 | −37.4 | −24.8 | 0.663101604278075 |
| zma-miR171k-5p:zma-miR171h-5p | Boerner_Z27kG1_00580 | 730-750 | −35.4 | −23.6 | 0.666666666666667 |
| zma-miR171n-5p | Boerner_Z27kG1_20123 | 1069-1091 | −35.8 | −25.9 | 0.723463687150838 |
| zma-miR172a:zma-miR172c-3p:zma-miR172d-3p:zma-miR172b-3p | Li_TCONS_00065651 | 597-618 | −33.2 | −23.6 | 0.710843373493976 |
| zma-miR172b-5p:zma-miR172d-5p | Li_TCONS_00044327 | 23-44 | −34.5 | −22.7 | 0.657971014492754 |
| zma-miR172c-5p | Li_TCONS_00044327 | 23-44 | −36.5 | −25.3 | 0.693150684931507 |
| zma-miR172e | Li_TCONS_00065651 | 596-618 | −36 | −23.5 | 0.652777777777778 |
| zma-miR319a-5p:zma-miR319c-5p | Li_TCONS_00081252 | 74-96 | −39.1 | −26.42 | 0.675703324808184 |
| zma-miR319a-5p:zma-miR319c-5p | zhang_TCONS_00063429 | 16-39 | −39.1 | −27.16 | 0.694629156010230 |
| zma-miR393c-5p:zma-miR393a-5p | Li_TCONS_00080809 | 144-164 | −39.1 | −25.7 | 0.657289002557545 |
| zma-miR394b-3p:zma-miR394a-3p | Boerner_Z27kG1_10860 | 353-375 | −38.9 | −26.44 | 0.679691516709512 |
| zma-miR394b-3p:zma-miR394a-3p | Li_TCONS_00072326 | 83-101 | −38.9 | −25.7 | 0.660668380462725 |
| zma-miR394b-3p:zma-miR394a-3p | Li_TCONS_00089213 | 283-304 | −38.9 | −26.3 | 0.676092544987147 |
| zma-miR394b-5p:zma-miR394a-5p | Boerner_Z27kG1_06309 | 454-473 | −39.1 | −26.3 | 0.672634271099744 |
| zma-miR394b-5p:zma-miR394a-5p | Boerner_Z27kG1_10706 | 340-363 | −39.1 | −27.3 | 0.698209718670077 |
| zma-miR395b-5p | Li_TCONS_00047895 | 156-179 | −38.6 | −28.68 | 0.743005181347150 |
| zma-miR395b-5p | Li_TCONS_00047896 | 156-179 | −38.6 | −28.68 | 0.743005181347150 |
| zma-miR395c-5p | Li_TCONS_00080157 | 364-381 | −40.6 | −27.7 | 0.682266009852217 |
| zma-miR395i-5p | Li_TCONS_00047895 | 156-179 | −40.4 | −31.38 | 0.776732673267327 |
| zma-miR395i-5p | Li_TCONS_00047896 | 156-179 | −40.4 | −31.38 | 0.776732673267327 |
| zma-miR395k-5p | Boerner_Z27kG1_14168 | 189-212 | −36.2 | −23.6 | 0.651933701657459 |
| zma-miR395k-5p | Boerner_Z27kG1_16395 | 212-235 | −36.2 | −23.6 | 0.651933701657459 |
| zma-miR395k-5p | Boerner_Z27kG1_21452 | 380-403 | −36.2 | −23.6 | 0.651933701657459 |
| zma-miR395k-5p | Li_TCONS_00051216 | 53-77 | −36.2 | −26.02 | 0.718784530386740 |
| zma-miR395l-5p | Li_TCONS_00062888 | 247-268 | −38.4 | −28.6 | 0.744791666666667 |
| zma-miR395n-5p | Li_TCONS_00047895 | 156-179 | −38.3 | −28.38 | 0.740992167101828 |
| zma-miR395n-5p | Li_TCONS_00047896 | 156-179 | −38.3 | −28.38 | 0.740992167101828 |
| zma-miR396b-3p:zma-miR396a-3p | Li_TCONS_00019831 | 289-309 | −32.9 | −23.4 | 0.711246200607903 |
| zma-miR396g-5p:zma-miR396h | Boerner_Z27kG1_02332 | 1122-1144 | −35.3 | −23 | 0.651558073654391 |
| zma-miR396g-5p:zma-miR396h | Li_TCONS_00081264 | 211-233 | −35.3 | −23.78 | 0.673654390934844 |
| zma-miR398b-3p:zma-miR398a-3p | Li_TCONS_00081462 | 279-299 | −45.3 | −30.08 | 0.664017660044150 |
| zma-miR399d-5p | Li_TCONS_00097416 | 279-299 | −44.2 | −28.88 | 0.653393665158371 |
| zma-miR399e-5p | Boerner_Z27kG1_08283 | 467-487 | −41.4 | −30.6 | 0.739130434782609 |
| zma-miR399e-5p | Li_TCONS_00097327 | 326-349 | −41.4 | −27 | 0.652173913043478 |
| zma-miR399g-5p | Boerner_Z27kG1_13975 | 327-345 | −49.4 | −35.6 | 0.720647773279352 |
| zma-miR444a:zma-miR444b | Boerner_Z27kG1_21675 | 448-466 | −35.7 | −25.2 | 0.705882352941176 |
| zma-miR482-3p | Boerner_Z27kG1_19929 | 311-332 | −35.2 | −28.4 | 0.806818181818182 |
| zma-miR482-3p | Li_TCONS_00031436 | 121-145 | −35.2 | −30.2 | 0.857954545454545 |
| zma-miR482-3p | Li_TCONS_00056585 | 185-206 | −35.2 | −23.4 | 0.664772727272727 |
| zma-miR482-3p | Li_TCONS_00072944 | 771-793 | −35.2 | −25.3 | 0.718750000000000 |
| zma-miR482-3p | Li_TCONS_00097147 | 282-301 | −35.2 | −24.4 | 0.693181818181818 |
| zma-miR482-5p | Li_TCONS_00011383 | 222-239 | −36.7 | −24.1 | 0.656675749318801 |
| zma-miR482-5p | Li_TCONS_00024356 | 309-331 | −36.7 | −24.2 | 0.659400544959128 |
| zma-miR482-5p | Li_TCONS_00074927 | 138-158 | −36.7 | −24.38 | 0.664305177111717 |
| zma-miR528a-3p:zma-miR528b-3p | zhang_TCONS_00045504 | 663-688 | −42.2 | −30.6 | 0.725118483412322 |
amiRNA data from miRBase 21.0. bDecoyed lincRNA genes for the miRNAs. cThe starting and terminating sites in the lincRNAs when it is bound by the miRNAs. dMFE of a perfectly matched site. eMFE of the alignments. fMFEsite/MFEperfect, the calculation based on the method in Tafer et al [50]