(
A) Coomassie-stained native gel of wildtype (wt), V461F, ADDA and compound ADDA-V461F mutant BiP (each at 50 µM) purified from
E. coli and allowed to equilibrate 16 hr at room temperature before analysis by native-PAGE (upper panel). The major species have been numbered I-V by order of descending mobility. The same samples were applied to SDS-PAGE as a loading control (lower panel). (
B) A schema of the BiP species involved in the experiment in ‘A’ above and in
Figure 7. The BiP nucleotide binding domain (NBD) is colored blue, its substrate binding domain (SBD) orange and the interdomain linker green. The V461F mutation (in the SBD) and the ADDA mutation (in the interdomain linker) are indicated by crosses. SubA is cartooned by scissors. BiP
V461F is unable to engage in substrate binding and its interdomain linker is unprotected. BiP
ADDA, which is able to bind substrates is unable to undergo linker-binding mediated homo-oligomerization, and is uncleaved by SubA [the gray double-headed arrows depict putative alternative (weak) substrate binding interactions unmasked by the ADDA mutation]. BiP
ADDA and BiP
V461F are able to form heterodimers, but these are resistant to cleavage by SubA.