Table 3. Conserved domains of the orthologs of hypothetical proteins in the subtractive library.
| EST 1 | Domain Name 2 | Accession 3 | Description 4 | Interval 5 | E-value 6 |
|---|---|---|---|---|---|
| 11sF | LysM | cd00118 | Lysine Motif | 130–258 | 6.18E-11 |
| LytE | COG1388 | FOG: LysM repeat (found in outer membranes) | 382–657 | 1.11E-08 | |
| FAM53 super family | cl21101 | Family of FAM53 | 170–514 | 4.44E-05 | |
| 1cF | RHOD | cd00158 | Rhodanese Homology Domain | 1057–1404 | 3.08E-09 |
| Trp-synth-beta_II super family | cl00342 | Tryptophan synthase beta superfamily (fold type II) | 85–969 | 9.42E-40 | |
| 56cR | Abhydrolase_6 | pfam12697 | Alpha/beta hydrolase family | 241–1038 | 4.14E-16 |
| TT_ORF1 super family | cl20238 | Torque teno viral orf 1 | 797–916 | 2.67E-05 | |
| 15cF | RhaT | COG0697 | Permeases of the drug/metabolite transporter (DMT) superfamily | 461–1243 | 2.35E-14 |
| 24cF | PEMT super family | cl21511 | Phospholipid methyltransferase | 85–675 | 6.50E-38 |
| 55cR | EI24 | pfam07264 | Etoposide-induced protein 2.4 | 247–807 | 3.53E-10 |
| 71cR | NTF2_like super family | cl09109 | Nuclear transport factor 2 (NTF2-like) superfamily | 90–455 | 2.19E-54 |
| 84cR | PEMT super family | cl21511 | Phospholipid methyltransferase | 163–1020 | 1.05E-44 |
| 200sF | Tyrosinase | pfam00264 | Common central domain of tyrosinase | 295–984 | 2.98E-71 |
| 207sF | LDB19 super family | cl15231 | Arrestin N terminal like family | 578–1117 | 9.96E-39 |
| 214sR3 | R3H-assoc | pfam13902 | R3H-associated N-terminal domain | 247–582 | 1.63E-34 |
| 40cR | no domains | ||||
| 77sR3 | no domains |
1 The library names of the EST sequences in the subtractive library [7]; F = forward library (down-regulated in crg1 mutant); R = reverse library (upregulated in crg1 mutant)
2 The domain name given in The Conserved Domain Database in the NCBI website [39]
3 Accession numbers of the conserved domains
4 A brief description of the domains
5 The positions within the C. nicotianae genes that the domains are aligning.
6 E-value indicates statistical significance for the similarity between the hypothetical protein sequence and the sequence of the characterized domain.