Table 3.

Test results illustrating the relative sensitivity (TPR) of each tool

Family		Riboswitch finder		RiboSW		DRD
Name	Number of sequences	Number of hits	TPR	Number of hits	TPR	Number of hits	TPR
Cobalamin	50	–	–	44	0.88	46	0.92
FMN	50	–	–	48	0.96	49	0.98
glmS	18	–	–	16	0.89	17	0.94
Glycine	44	–	–	24	0.55	41	0.93
Lysine	47	–	–	45	0.96	45	0.96
preQ1	41	–	–	36	0.88	39	0.95
Purine	50	48	0.96	47	0.94	48	0.96
SAM-I	50	–	–	45	0.90	44	0.88
SAM-II	40	–	–	37	0.93	40	1.00
TPP	50	–	–	32	0.64	45	0.90
ykkC-yxkD	50	–	–	42	0.84	49	0.98
yybP-ykoY	17	–	–	13	0.76	17	1.00
Totals	507	–	–	429	0.85	480	0.95