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. 2014 Jul 22;30(21):3020–3028. doi: 10.1093/bioinformatics/btu485

Table 1.

MCMC statistics for the time-homogenous model

Acceptance rates
P Timea Eff.sizeb Onec Timed Threee Linf
25 54 1000 86 90 31 86
50 63 1000 81 90 31 86
100 81 779 74 87 31 86
200 128 861 64 82 31 86
400 173 462 53 75 31 86
800 366 745 39 66 31 86
1600 688 554 26 55 31 86

aTime per saved point (in seconds). bEffective sample size (measured over 1000 points saved after burn-in). cOnePathMove. dTimePathMove. eThreePathMove. fLinearBrownianSigmaMove.