Table 1.
Protein count analyses for select KEGG subcategories
| Category | Number of proteins | % of total | P-value adjusted | ||
|---|---|---|---|---|---|
| GC | KN | GC | KN | ||
| Amino acid metabolism | 374 | 242 | 7 | 10 | 1E-04 |
| Carbohydrate metabolism | 441 | 249 | 9 | 11 | 1E-02 |
| Cell communication | 152 | 38 | 3 | 2 | 5E-03 |
| Cell growth and death | 302 | 69 | 6 | 3 | 5E-06 |
| Cell motility | 107 | 30 | 2 | 1 | 4E-02 |
| Energy metabolism | 393 | 246 | 8 | 11 | 4E-04 |
| Environmental adaptation | 161 | 36 | 3 | 2 | 7E-04 |
| Folding sorting and degradation | 571 | 274 | 11 | 12 | 4E-01 |
| Lipid metabolism | 229 | 124 | 4 | 5 | 1E-01 |
| Membrane transport | 75 | 20 | 1 | 1 | 6E-02 |
| Metabolism of other amino acids | 129 | 82 | 3 | 4 | 2E-02 |
| Nucleotide metabolism | 297 | 99 | 6 | 4 | 2E-02 |
| Replication and repair | 156 | 45 | 3 | 2 | 2E-02 |
| Signal transduction | 583 | 154 | 11 | 7 | 3E-07 |
| Transport and catabolism | 356 | 129 | 7 | 6 | 6E-02 |
| Translation | 559 | 315 | 11 | 14 | 6E-03 |
| Transcription | 264 | 155 | 5 | 7 | 2E-02 |
Boldface, subcategories that are significantly over-or under-represented in KN in comparison to GC-free; Number of proteins, total number of proteins in each subcategory; % of total, the relative contribution of each subcategory to the total number of proteins assigned KO numbers by KEGG; P-value adjusted, P-value adjusted by false discovery rate