Table 2.
Thermodynamic properties for parkin activation
| Protein | Activator | Kd (μM) | N | ΔH (kJ/mol) | ΔS (J/molK) |
|---|---|---|---|---|---|
| A. R0RBR Parkin with Ubl and Ub | |||||
| R0RBR | Ubl | 3.8 ± 1.3 | 0.98 | −44 ± 3 | −44 |
| Ubl S65D | 5.0 ± 0.9 | 1.03 | −38 ± 1 | −29 | |
| Ubl S65E | 5.3 ± 1.2 | 0.98 | −46 ± 2 | −54 | |
| pUbl | 26 ± 10 | 1.04 | −16 ± 9 | 33 | |
| R0RBR | Ub | 67 ± 1.0 | 1.05 | 31 ± 1 | 184 |
| Ub S65D | 6.6 ± 0.3 | 1.01 | 25 ± 1 | 184 | |
| Ub S65E | 6.6 ± 0.1 | 1.10 | 48 | 261 | |
| pUb | 0.016 ± 0.002 | 0.93 | 32 | 261 | |
| B. Full-length Parkin with Ubl and Ub | |||||
| Parkin | Ubl | N.O. | – | – | – |
| Ub | 45 ± 9 | 0.90 | 10 ± 1 | 115 | |
| pUb | 0.16 ± 0.02 | 1.09 | 50 | 293 | |
| 0.37 ± 0.04a | – | – | – | ||
| pParkin | pUb | 0.021 ± 0.006 | |||
| 0.017 ± 0.005a | – | – | – | ||
Average values from a minimum of two experiments.
Data from Ordureau et al (2014).
N.O.,binding not observed.