Table 2.
The SNP frequencies in SR3 and JN177
| SNPs | Type | SNPs (per 1000 nt) | ||
|---|---|---|---|---|
| SR3-JN177 | SR3-Ta | JN177-Ta | ||
| Transitions | C → T | 2.065 | 0.788 | 0.727 |
| T → C | 1.776 | 1.016 | 1.031 | |
| G → A | 1.542 | 1.168 | 0.843 | |
| A → G | 1.318 | 0.641 | 0.602 | |
| Total | 6.701 | 3.613 | 3.203 | |
| Transversions | A → T | 0.267 | 0.154 | 0.139 |
| T → A | 0.252 | 0.208 | 0.180 | |
| C → G | 1.142 | 0.399 | 0.412 | |
| G → C | 1.084 | 0.680 | 0.671 | |
| G → T | 0.455 | 0.320 | 0.297 | |
| T → G | 0.386 | 0.273 | 0.281 | |
| A → C | 0.507 | 0.243 | 0.239 | |
| C → A | 0.533 | 0.349 | 0.342 | |
| Total | 4.627 | 2.625 | 2.561 | |
| Total SNPs | 11.328 | 6.238 | 5.764 | |
SR3-JN177: JN177 unigene sequences queried with those of SR3. SR3-Ta: SR3 unigene sequences queried with wheat ESTs housed in GenBank. JN177-Ta: JN177 unigene sequences queried with wheat ESTs housed in GenBank