Table 4.
Indel variation in SR3 and JN177 unigene sequences
| Sizes | Type | SR3-177 (%) | SR3-TA (%) | 177-Ta (%) |
|---|---|---|---|---|
| Small indels | Insertion | 51.57 | 58.02 | 37.66 |
| (1–10 nt) | Deletion | 30.57 | 17.02 | 14.57 |
| Indel | 82.14 | 75.04 | 52.23 | |
| Large indels | Insertion | 3.45 | 1.75 | 1.32 |
| (23–574 nt) | Deletion | 3.25 | 9.8 | 8.94 |
| Indel | 6.70 | 11.55 | 10.26 |
“Small” indels were defined as those lying within an aligned sequence, while “large” indels split matched sequence into two separate alignments. The table shows the percentage of unigenes affected by insertion/deletions. SR3-JN177: JN177 unigene sequences queried with those of SR3. SR3-Ta: SR3 unigene sequences queried with wheat ESTs housed in GenBank. JN177-Ta: JN177 unigene sequences queried with wheat ESTs housed in GenBank