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. 2015 Oct 15;10:6523–6539. doi: 10.2147/IJN.S89610

Table S6.

Structure statistics for AMC NMR ensemble of structures in TFE/H2O (80/20)

NOE upper distance limits 175
Angle constraints 74
Residual target function, Å2 0.21±0.02
Residual NOE violations
Total Number >0.1 Å* 1
Maximum Å 0.23
Residual angle violations
Total number 0
Atomic pairwise RMSD,# Å
Backbone atoms (a.a. 1–11) 0.22±0.17
Heavy atoms (a.a. 1–11) 0.65±0.15
Ramachandran statistics
Residues in core regions 68.8%
Residues in allowed regions 25.0%
Residues in generous regions 6.3%
Residues in disallowed regions 0.0%

Notes:

*

Average CYANA1 violations;

#

evaluated with iCing;4

Procheck-NMR5 analysis (residues 1–11). The final structure calculation included 175 upper limit distance restraints from NOE data (83 intra-residue, 58 short-range, 22 medium-range, and 12 long-range) together with three lower limit distance constraints that were inserted for the disulfide bridge between Cys1 and Cys11. Calculations started from 100 random conformers; the 20 structures with the lowest CYANA target functions were included in the NMR ensemble and additionally inspected with the programs MOLMOL,2 UCSF Chimera,3 and iCing.4 Data are presented as mean ± standard deviation.

Abbreviations: a.a., amino acid; AMC, antimicrobial cyclic peptide; NMR, nuclear magnetic resonance; NOE, Nuclear Overhauser effect; RMSD, root mean square deviation; TFE, 2-2-2 trifluoroethanol-d3; CYANA, Combined Assignment and Dynamics Algorithm for NMR Applications; UCSF, University of California San Francisco.