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. 2004 Dec 15;10(24):3553–3558. doi: 10.3748/wjg.v10.i24.3553

Table 1.

Nucleotide sequences of methylated and unmethylated probes analyzed in oligonucleotide microarray

p16 CpG sites Oligonucleotide sequences Tm (°C)
#4-6 M: 5’-NH2-(T)10-CAACCGCCGAACGCAC-3’ 56
U: 5’-NH2-(T)10-CAACCACCAAACACAC-3’ 50
#8-10 M: 5’-NH2-(T)10-CAACCGCCGAACGCAC-3’ 61
U: 5’-NH2-(T)10-CCACCACCCACTACCTA-3’ 53
#11-13 M: 5’-NH2-(T)10-CCGCCGCCGACTCCAT-3’ 61
U: 5’-NH2-(T)10-CCACCACCAACTCCAT-3’ 53
#15-17 M: 5’-NH2-(T)10-AACCGCGACCGTAACCAA-3’ 58
U: 5’-NH2-(T)10-AACCACAACCATAACCAA-3’ 50
#18,19 M: 5’-NH2-(T)10-TCTACCCGACCCCGAACC-3’ 60
U: 5’-NH2-(T)10-TCTACCCAACCCCAAACC-3’ 55
#20,21 M: 5’-NH2-(T)10-AACAACGCCCGCACCTC-3’ 57
U: 5’-NH2-(T)10-AACAACACCCACACCTC-3’ 50
#22,23 M: 5’-NH2-(T)10-ACAACGCCCCCGCCTC-3’ 59
U: 5’-NH2-(T)10-ACAACACCCCCACCTC-3’ 52
#24,25 M: 5’-NH2-(T)10-AACTATTCGATACGTTAAAC-3’ 48
U: 5’-NH2-(T)10-AACTATTCAATACATTAAAC-3’ 39
#26-28 M: 5’-NH2-(T)10-ATCGACCTCCGACCGTAAC-3’ 55
U: 5’-NH2-(T)10-ATCAACCTCCAACCATAAC-3’ 49