Table 1.
Nucleotide sequences of methylated and unmethylated probes analyzed in oligonucleotide microarray
| p16 CpG sites | Oligonucleotide sequences | Tm (°C) | |
| #4-6 | M: | 5’-NH2-(T)10-CAACCGCCGAACGCAC-3’ | 56 |
| U: | 5’-NH2-(T)10-CAACCACCAAACACAC-3’ | 50 | |
| #8-10 | M: | 5’-NH2-(T)10-CAACCGCCGAACGCAC-3’ | 61 |
| U: | 5’-NH2-(T)10-CCACCACCCACTACCTA-3’ | 53 | |
| #11-13 | M: | 5’-NH2-(T)10-CCGCCGCCGACTCCAT-3’ | 61 |
| U: | 5’-NH2-(T)10-CCACCACCAACTCCAT-3’ | 53 | |
| #15-17 | M: | 5’-NH2-(T)10-AACCGCGACCGTAACCAA-3’ | 58 |
| U: | 5’-NH2-(T)10-AACCACAACCATAACCAA-3’ | 50 | |
| #18,19 | M: | 5’-NH2-(T)10-TCTACCCGACCCCGAACC-3’ | 60 |
| U: | 5’-NH2-(T)10-TCTACCCAACCCCAAACC-3’ | 55 | |
| #20,21 | M: | 5’-NH2-(T)10-AACAACGCCCGCACCTC-3’ | 57 |
| U: | 5’-NH2-(T)10-AACAACACCCACACCTC-3’ | 50 | |
| #22,23 | M: | 5’-NH2-(T)10-ACAACGCCCCCGCCTC-3’ | 59 |
| U: | 5’-NH2-(T)10-ACAACACCCCCACCTC-3’ | 52 | |
| #24,25 | M: | 5’-NH2-(T)10-AACTATTCGATACGTTAAAC-3’ | 48 |
| U: | 5’-NH2-(T)10-AACTATTCAATACATTAAAC-3’ | 39 | |
| #26-28 | M: | 5’-NH2-(T)10-ATCGACCTCCGACCGTAAC-3’ | 55 |
| U: | 5’-NH2-(T)10-ATCAACCTCCAACCATAAC-3’ | 49 |