Table 5.
Correlation Coefficient | |||||
---|---|---|---|---|---|
Method/# Proteins | Parameters | 175 nm | 190 nm | 208 nm | 220 nm |
DInaMo/CDCALC | 4000 Ho | 0.79 | 0.82 | 0.80 | 0.84 |
24 proteins | 6000 Ho | 0.82 | 0.82 | 0.81 | 0.85 |
4000 Hx | 0.81 | 0.83 | 0.81 | 0.85 | |
6000 Hx | 0.89 | 0.84 | 0.88 | 0.85 | |
4000 Hy | 0.88 | 0.82 | 0.80 | 0.83 | |
6000 Hy | 0.89 | 0.81 | 0.82 | 0.84 | |
4000 Jo | 0.86 | 0.78 | 0.82 | 0.85 | |
6000 Jo | 0.87 | 0.80 | 0.82 | 0.86 | |
4000 Jx | 0.88 | 0.81 | 0.81 | 0.86 | |
6000 Jx | 0.89 | 0.82 | 0.81 | 0.87 | |
4000 Jy | 0.68 | 0.46 | 0.85 | 0.84 | |
6000 Jy | 0.77 | 0.73 | 0.86 | 0.85 | |
4000 OL | 0.52 | 0.82 | 0.82 | 0.85 | |
6000 OL | 0.74 | 0.80 | 0.83 | 0.87 | |
DInaMo/CAPPS | 4000 Ho | 0.87 a | 0.77 | 0.56 | 0.70 |
17 proteins | 6000 Ho | 0.89 a | 0.76 | 0.59 | 0.71 |
4000 Hx | 0.88 a | 0.77 | 0.59 | 0.70 | |
6000 Hx | 0.90 a | 0.76 | 0.60 | 0.71 | |
4000 Hy | 0.88 a | 0.73 | 0.56 | 0.68 | |
6000 Hy | 0.90 a | 0.72 | 0.57 | 0.69 | |
4000 Jo | 0.57 a | 0.80 | 0.56 | 0.65 | |
6000 Jo | 0.69 a | 0.82 | 0.54 | 0.66 | |
4000 Jx | 0.71 a | 0.80 | 0.56 | 0.65 | |
6000 Jx | 0.78 a | 0.81 | 0.55 | 0.66 | |
DInaMo/CAPPS | 4000 Jy | 0.47 a | 0.68 | 0.58 | 0.65 |
17 proteins | 6000 Jy | 0.61 a | 0.78 | 0.56 | 0.67 |
Matrix Method [25] 71 proteins | peptide backbone + side chain + charge-transfer | 0.79 | 0.75 | NA | 0.88 b |
Dipole Interaction Model [3,6] 15 proteins | 6000 Hy | NA | 0.89 | 0.75 | 0.74 |
Matrix Method [6,12] 23 proteins | semiempirical | NA | 0.69 | 0.72 | 0.86 |
Matrix Method [6,12] 47 proteins | semiempirical | NA | 0.68 | 0.67 | 0.93 |
Matrix Method [6,69]15 proteins | ab initio | NA | 0.87 | 0.71 | 0.96 |
Matrix Method [6,69] 23 proteins | ab initio | NA | 0.81 | 0.73 | 0.89 |
Matrix Method [6,69] 29 proteins | ab initio | NA | 0.84 | 0.73 | 0.90 |
Matrix Method [6,69] 47 proteins | ab initio | NA | 0.86 | 0.80 | 0.94 |
a At 176 nm; b At 222 nm. represents the best Spearman rank correlation for a set of calculations.