Table 2.
Web server for protein-protein interaction and sites prediction.
| Problem | Name | Websites | Input format |
|---|---|---|---|
| Protein interaction sites prediction | PPISP | http://pipe.scs.fsu.edu/ppisp.html | PDB file |
| http://pipe.scs.fsu.edu/meta-ppisp.html | |||
| Protemot | http://protemot.csbb.ntu.edu.tw/index.html | PDB ID | |
| SPPIDER | http://sppider.cchmc.org | PDB file or PDB ID | |
| Whiscy | http://nmr.chem.uu.nl/Software/whiscy/index.html | PDB file | |
|
| |||
| Protein-protein interaction prediction | InterPreTS | http://www.russell.embl.de/cgi-bin/tools/interprets.pl | Fasta, 40 sequences at most |
| PIE | http://www.ncbi.nlm.nih.gov/CBBresearch/Wilbur/IRET/PIE/ | Gene ID or name | |
| PPI | http://121.192.180.204:8080/PPI/Home.jsp | Fasta | |
| PredHS | http://www.predhs.org/ | PDB files, 10 files at most | |
| Pred-PPI | http://cic.scu.edu.cn/bioinformatics/predict_ppi/default.html | Two fasta sequences | |
| Prism | http://cosbi.ku.edu.tr/prism/ | Two PDB IDs or PDB files | |
| Struct2Net | http://groups.csail.mit.edu/cb/struct2net/webserver/ | Gene names or keywords | |