Figure 1. Phase 3 integrated SV callset.

a, Novelty based on overlap of our SV set with DGV¹⁹ (upper panel, broken down by SV class), of collapsed CNVRs with earlier 1000 Genomes Project releases^6,8 (middle panel) and of our SV set with refs 6, 8 (bottom panel). b, Size distribution of ascertained SVs (bin width is uniform in log-scale). DEL, biallelic deletion, DUP, biallelic duplication, INV, inversion, INS, non-reference insertion (including MEIs and NUMTs). c, Breakpoint precision of assembled deletions stratified by VAF (split-read caller Pindel²³ shown separately). d, SV allele sharing across continental groups. e, LD properties of biallelic SV classes.

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