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. 2015 Oct 23;16:339. doi: 10.1186/s12859-015-0776-9

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© Jin et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — Interface of PDB-Explorer website. Main window: color-coded similarity map of PDB in 3DP-similarity space, with image of the protein in the pixel marked by the mouse cursor on the map. Upload PDB: place to load a user-defined PDB-file to be shown on the 3DP-similarity map (structure must contain properly annotated atoms). Average PDB: interactive 3D-view of the molecule corresponding to the most average entry in selected pixel. Locate Molecule: interface to type PDB entry codes to be shown on the map. Show Bin: full list of all proteins contain in the selected pixel. Similarity Search: window to enter PDB-code and search for nearest neighbours in 3DP-space, and display of the nearest neighbour list. JSmol: 3D-display of selected entry