Table 4.
Counts of predicted rumen metagenomic proteins and their KO group. Summary of 2774 predicted proteins from the 8 metagenomic rumen samples. KEGG ID is the predicted K0 group. Columns show the number of full length candidates within each K0 group, the number which have 100 % identical matches in NR, the number showing 100 % conservation with a protein in NR, the number with a 90 % identical match, and the number showing at least 90 % conservation with a protein in NR
| KEGG ID | Description | # full length candidates | # 100 % identical in NR | # 100 % conserved in NR | # 90 % identical NR | # 90 % conserved in NR |
|---|---|---|---|---|---|---|
| K06001 | Tryptophan synthase beta chain [EC:4.2.1.20] | 194 | 1 | 1 | 32 | 78 |
| K02118 | V/A-type H+-transporting ATPase subunit B [EC:3.6.3.14] | 337 | 2 | 4 | 65 | 169 |
| K02117 | V/A-type H+-transporting ATPase subunit A [EC:3.6.3.14] | 105 | 21 | |||
| K00638 | Chloramphenicol O-acetyltransferase [EC:2.3.1.28] | 76 | 3 | 3 | 7 | 25 |
| K00200 | Formylmethanofuran dehydrogenase subunit A [EC:1.2.99.5] | 57 | 2 | 8 | ||
| K03531 | Cell division protein FtsZ | 167 | 3 | 4 | ||
| K00201 | Formylmethanofuran dehydrogenase subunit B [EC:1.2.99.5] | 20 | 3 | 7 | ||
| K00399 | Methyl-coenzyme M reductase alpha subunit [EC:2.8.4.1] | 1 | 1 | 1 | ||
| K00123 | Formate dehydrogenase, alpha subunit [EC:1.2.1.2] | 3 | 1 | |||
| K03388 | Heterodisulfide reductase subunit A [EC:1.8.98.1] | 352 | 1 | 1 | 26 | 75 |
| K14126 | F420-non-reducing hydrogenase subunit A [EC:1.12.99.-] | 6 | 1 | 4 | ||
| K01079 | Phosphoserine phosphatase [EC:3.1.3.3] | 0 | 0 | 0 | 0 | 0 |
| K00401 | Methyl-coenzyme M reductase beta subunit [EC:2.8.4.1] | 2 | ||||
| K00527 | Ribonucleoside-triphosphate reductase [EC:1.17.4.2] | 120 | 24 | 57 | ||
| K02337 | DNA polymerase III subunit alpha [EC:2.7.7.7] | 108 | 5 | 12 | ||
| K02837 | Peptide chain release factor RF-3 | 569 | 2 | 5 | 103 | 271 |
| K01893 | Asparaginyl-tRNA synthetase [EC:6.1.1.22] | 437 | 3 | 54 | 155 | |
| K00925 | Acetate kinase [EC:2.7.2.1] | 132 | 1 | 1 | 23 | 38 |
| K00656 | Formate C-acetyltransferase [EC:2.3.1.54] | 101 | 18 | 54 | ||
| K02948 | Small subunit ribosomal protein S11 | 178 | 6 | 16 | 49 | 57 |