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. 2015 Oct 22;11(10):e1005559. doi: 10.1371/journal.pgen.1005559

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© 2015 Duan et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Fig 3 — A. Numbers of hyper- and hypo-DMRs identified in each mutant. met18-1 rep.1 and met18-1 rep.2 are two replications of met18-1; met18-2 rep.1 and met18-2 rep.2 are two replications of met18-2. met18-1 represents the overlap of two met18-1 replications and met18-2 represents the overlap of two met18-2 replications. met18 represents the overlap of all four samples of met18 mutants. B. Compositions of hyper-DMRs identified in different mutants. TE, DMRs in transposons but not in protein-coding genes; Gene, DMRs in protein-coding genes but not in TEs; IG, intergenic regions; Other, DMRs that overlap with other features that do not belong to TE, Gene, or IG regions. C. Snapshots of some representative DNA hypermethylation loci in met18, ros1-4, and rdd mutants. Hyper-DMRs in the intergenic regions (upper panel), gene promoter regions (middle panel), and TE regions (lower panel) are shown. Blue and black words indicate plants in Col-0 and 35S::SUC2 transgene background, respectively. The exact length and chromosome coordinates of the hyper-DMRs are listed in the S1 Table.