Table 3. Pseudogenes with transcripts that are moderately to highly expressed, and show significant sequence similarity with a lncRNA.

Pseudogene	Ensembl defined loci	Cufflinks predicted loci	Conserved Protein from Blastx	Conserved lncRNA
ENSTBTAG00000009359	chr15:38,876,122–38,876,667	Chr15:38,869,503–38,876,667	Ferritin heavy chain gene	NR_002201.1 (human)
				NR_073181.1 (mouse)
ENSBTAG00000046307	chr14:20,738,814–20,740,407	chr14:20,738,690–20,741,057	enhancer-binding protein	ENST00000587312
ENSTBTAG00000000609	chr1:54,654,216–54,654,795	chr1:54,649,544–54,654,834	60S ribosomal protein L10, partial	NONHSAT091397
				NONMMUT040103
ENSTBTAG00000030281	chr11:104,186,563–104,187,141	chr11:104,185,811–104,188,790	ribosomal protein L9-like	NONBTAT002126
				NONSAT064119
				NONMMUT029554
ENSTBTAG000000337913	chr28:44,925,709–44,927,696	chr28:44,921,657–44,930,341	zinc finger protein 22	NONHSAT013060
ENSTBTAG00000007807	chr10:76,992,202–76,994,112	chr10:76,992,081–76,996,921	heat shock-related 70 kda protein	NONBTAT002672
				ENSMUST00000151136
				NONMMUT029382/3
ENSTBTAG00000021135	chr8:78,599,030–78,600,903	chr8:78,586,061–78,604,284	recQ-mediated genome instability protein 1	NONBTAT024698
				NR_031761.1 (mouse)
ENSTBTAG00000013311	chrX:94,378,601–94,380,496	chrX:94,378,159–94,380,748	eukaryotic peptide chain release factor GTP-Binding subunit	NONBTAT026758
				NONHSAT023985
				ENSMUST00000181526
				NONMMUT000613
ENSBTAG00000016116	chr12: 33,647,815–33,648,405	Chr12: 33,647,815–33,648,405	MARCKS-related protein 1 (MARCKSL1)	NR_052852.1 (human)
				NR_028405.1 (mouse)