Table 1. List of genes recovered by different types of bivariate ETM, containing all flowering genes assigned to any of the 2000 SNPs with the lowest p-value for each method.
Numbers indicate the rank for each gene (1 being the gene with lowest associated p-value). un: univariate analysis on flowering time, dl: bivariate analysis (MTMM) using summer day length and flowering time.
| gene | name | LM | EN | RF | CC | un | dl |
|---|---|---|---|---|---|---|---|
| AT4G11280 | ACS6 | 621 | 826 | 760 | 217 | - | 1228 |
| AT3G49700 | ACS9 | 1223 | - | - | - | - | - |
| AT4G22950 | AGL19 | - | - | - | - | - | 1070 |
| AT4G35450 | ARK2A | 347 | 539 | 351 | 913 | 1187 | 529 |
| AT4G32980 | ATH1 | 240 | 411 | 681 | - | - | 313 |
| AT2G31650 | ATX1 | 372 | 162 | 44 | 1007 | 747 | 117 |
| AT5G37260 | CIR1 | 1253 | - | - | 1018 | - | - |
| AT2G23380 | CLF | - | - | - | 1319 | - | - |
| AT2G33540 | CPL3 | 788 | 1035 | - | 1333 | 728 | - |
| AT4G00450 | CRP | 387 | 449 | - | 353 | 332 | 562 |
| AT2G38050 | DET2 | 374 | - | 752 | 564 | - | 752 |
| AT4G03400 | DFL2 | 59 | 171 | 97 | 8 | 5 | 108 |
| AT5G45830 | DOG1 | 90 | 347 | 60 | 63 | 507 | 504 |
| AT4G03430 | EMB2770 | 208 | 343 | 694 | 143 | 837 | 213 |
| AT4G15880 | ESD4 | - | - | 1028 | - | - | - |
| AT5G01400 | ESP4 | - | - | - | - | - | 974 |
| AT1G04400 | FHA | - | 518 | 888 | - | - | 485 |
| AT2G21070 | FIO1 | - | - | - | - | 868 | - |
| AT5G10140 | FLC | - | - | - | - | 671 | - |
| AT5G24860 | FPF1 | 117 | 235 | 134 | 15 | 677 | 990 |
| AT1G03160 | FZL | 422 | 535 | 664 | 836 | - | 412 |
| AT4G02780 | GA1 | 220 | 84 | 78 | 36 | 16 | 170 |
| AT1G62830 | LDL1 | 161 | 360 | 218 | 355 | 956 | 439 |
| AT3G18165 | MOS4 | - | - | - | 1201 | - | - |
| AT2G44170 | NMT2 | - | - | 834 | - | - | - |
| AT2G43010 | PIF4 | - | - | - | 542 | - | - |
| AT2G18790 | PHYB | - | 943 | - | 1078 | - | - |
| AT3G12810 | PIE1 | - | - | - | 668 | - | - |
| AT1G09530 | PIF3 | - | 1258 | - | - | - | 757 |
| AT3G62090 | PIL2 | - | - | 922 | - | - | - |
| AT1G64520 | RPN12a | - | - | - | 1160 | - | - |
| AT3G52180 | SEX4 | 1274 | 830 | - | - | - | 1212 |
| AT4G11110 | SPA2 | 63 | 257 | 364 | 11 | 968 | 200 |
| AT2G42200 | SPL9 | - | - | - | 848 | - | - |
| AT1G16610 | SR45 | 853 | - | - | 1099 | - | - |
| AT3G28730 | SSRP1 | 452 | 591 | 685 | 966 | - | 592 |
| AT4G02700 | SULTR3;2 | - | - | 1253 | - | 410 | 1215 |
| AT5G19600 | SULTR3;5 | 1328 | - | - | - | - | - |
| AT2G22540 | SVP | 72 | 126 | 173 | 139 | 147 | 198 |
| AT3G22380 | TIC | 1041 | - | - | 292 | 466 | - |
| AT4G20370 | TSF | - | - | - | 1089 | 1157 | - |
| AT5G57380 | VIN3 | - | - | - | - | 1222 | - |
| AT5G07200 | YAP169 | - | - | - | - | 822 | - |