TABLE 2 .
Genes upregulated and differentially expressed in wild-type strain versus a clr-2 constitutive expression strain and whose promoter region was bound by CLR-2
| NCU no. | Locus | Annotation or domain |
|---|---|---|
| NCU00206a | cdh-1 | Cellobiose dehydrogenase |
| NCU00762a | gh5-1 | Glycosylhydrolase family 5 |
| NCU00801a | cdt-1 | Cellodextrin transporter |
| NCU00836a | gh61-7 | Polysaccharide monooxygenase (AA9 family) |
| NCU00870 | SET domain | |
| NCU01049c | Fasciclin domain | |
| NCU01050a,c | gh61-4 | Polysaccharide monooxygenase (AA9 family) |
| NCU01076 | Hypothetical protein | |
| NCU01900b | gh43-2 | Xylosidase/arabinosidase |
| NCU02009 | Ferric reductase domain | |
| NCU02059 | apr-3 | Endothiapepsin |
| NCU02138 | Hypothetical protein | |
| NCU02240a | gh61-1 | Polysaccharide monooxygenase (AA9 family) |
| NCU02855 | gh11-1 | Endo-1,4 β-xylanase |
| NCU02915a | RhoGAP domain | |
| NCU02916a | gh61-3 | Polysaccharide monooxygenase (AA9 family) |
| NCU03180c | Hypothetical protein | |
| NCU03181c | Acetylxylan esterase | |
| NCU03328c | gh61-6 | Polysaccharide monooxygenase (AA9 family) |
| NCU03329c | Domain of unknown function (DUF3632) | |
| NCU04850 | gh55-1 | Exo-β-1,3-glucanase |
| NCU04854 | gh7-2 | Endoglucanase |
| NCU04870b | ce1-1 | Acetyl xylan esterase |
| NCU05057a | gh7-1 | Endoglucanase |
| NCU05121 | gh45-1 | Glycosylhydrolase family 45 |
| NCU05846a | DUF1479 | |
| NCU05864a | Hypothetical protein | |
| NCU05924 | gh10-1 | Endo-1,4-β-xylanase |
| NCU05955a,c | gh74-1 | Cel74a; xyloglucanase |
| NCU05956c | gh2-2 | β-Galactosidase |
| NCU06277 | Microtubule-associated protein domain | |
| NCU07143 | 6-Phosphogluconolactonase | |
| NCU07190a | gh6-3 | Exoglucanase 3 |
| NCU07225b | gh11-2 | Endo-1,4-β-xylanase |
| NCU07326 | gh32 | Glycosylhydrolase family 32 |
| NCU07339a,c | Hypothetical protein | |
| NCU07340a,c | cbh-1 | Cellobiohydrolase |
| NCU07760 | gh61-2 | Polysaccharide monooxygenase (AA9 family) |
| NCU07787 | ccg-14 | Clock-controlled protein; cerato-platanin domain |
| NCU07897a,c | HET domain | |
| NCU07898a,c | gh61-13 | Polysaccharide monooxygenase (AA9 family) |
| NCU08114b | cdt-2 | Cellodextrin transporter |
| NCU08397 | Oligopeptide transporter domain | |
| NCU08398 | Aldose 1-epimerase | |
| NCU08409 | trp-3 | Tryptophan synthetase |
| NCU08412a | Endo-β-1,4-mannanase | |
| NCU08760 | gh61-5 | Polysaccharide monooxygenase (AA9 family) |
| NCU09416 | Cellulose-binding GDSL lipase/acylhydrolase | |
| NCU09523a,c | Hypothetical protein | |
| NCU09524a,c | Cellulose binding domain | |
| NCU09582 | ce4-1 | Chitin deacetylase |
| NCU09680a | gh6-2 | Exoglucanase |
| NCU09764 | gh61-14 | Polysaccharide monooxygenase (AA9 family) |
| NCU09775 | gh54-1 | α-N-Arabinofuranosidase |
a
NCU numbers in bold indicate promoter regions of genes bound by both CLR-1 and CLR-2.
b
NCU numbers in bold and in italics indicate promoter regions of genes bound by both CLR-2 and XLR-1.
c
NCU numbers indicate promoter regions that may regulate 2 genes in opposite orientations.