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. 2015 Oct 26;4:49. doi: 10.1186/s13742-015-0090-5

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© Stothard et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Principal component analysis of purebred animals based on sequence-derived genotypes. The genotypes of individuals from the seven purebred populations examined in this study were compared. Three Charolais samples appear in the Hereford cluster and two Hereford animals appear in the Charolais cluster, suggesting potential issues with sample sourcing or sample handling. These five samples are included in the final set of sequenced animals but are flagged as potentially problematic in Additional file 1. Angus (ANG), Charolais (CHA), Gelbvieh (GVH), Hereford (HER), Holstein (HOL), Limousin (LIM) and Simmental (SIM)