Table 4.
Number of antibiotic resistance genes or open reading frames according to antibiotic classes as predicted using Comprehensive Antibiotic resistance Database (CARD; http://arpcard.mcmaster.ca)
| E. coli isolate | Sequence type | Aminoglycoside | β-lactamase | Sulfonamide | Polymyxin | Peptide/Bacitracin | Lincosamide | Isoniazid/Miscellaneous | Mac/lin/phe/str/lina | Streptothricin | Antibiotic effluxb |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1047 | 2076 | 1 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 51 |
| 1009 | 73 | 0 | 2 | 0 | 8 | 1 | 1 | 1 | 1 | 0 | 51 |
| 904 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
| 910 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
| 913 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
| 923 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
| 926 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
| 929 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 51 |
| 934 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
| 937 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
| 939 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 53 |
| 943 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
| 947 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
| 949 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
| 780 | 127 | 1 | 3 | 0 | 7 | 1 | 2 | 1 | 1 | 1 | 52 |
| 1008 | 394 | 0 | 2 | 0 | 7 | 1 | 2 | 1 | 1 | 0 | 52 |
aMacrolide, linezolid, phenicol, streptogramin, lincosamide
bPredicted genes linked to antibiotic transport system or modulation of efflux systems