Table 1.
Differentially methylated genes between recurrent and non-recurrent chordoma samples
| UCSC_REF GENE_NAME | ID | Chromosome | CGI.Relation | Average β-value in recurrence | Average β-value in non-recurrence | Average β-value difference between recurrence and non-recurrence | P-value | Average in controls | UCSC_REF GENE_ACCESSION | Relation to Gene | UCSC_CPG_ISLANDS_NAME |
|---|---|---|---|---|---|---|---|---|---|---|---|
| FAM181B | cg19320476 | chr11 | Island | 0.439897 | 0.235521 | 0.204376 | 0.022539 | 0.046153 | NM_175885 | 1stExon | chr11:82443435–82444976 |
| NPR3 | cg17630392 | chr5 | Island | 0.47289 | 0.261363 | 0.204376 | 0.000756 | 0.079265 | NM_000908 | 1stExon | chr5:32709910–32714450 |
| RAI1 | cg10140454 | chr17 | Island | 0.783044 | 0.549829 | 0.204376 | 0.00584 | 0.372009 | NM_030665 | 5'UTR | chr17:17625605–17628500 |
| SLC16A5 | cg09300114 | chr17 | Island | 0.700374 | 0.474643 | 0.204376 | 0.00878 | 0.127086 | NM_004695 | 5'UTR | chr17:73083866–73084495 |
| ZNF397OS;ZNF397OS | cg16657538 | chr18 | Island | 0.493249 | 0.215783 | 0.204376 | 0.002872 | 0.051907 | NM_001166012;NM_001112734 | 5'UTR;5'UTR | chr18:32847284–32848130 |
| KANK2;KANK2 | cg07888912 | chr19 | North Shore | 0.58871 | 0.344717 | 0.204376 | 0.000285 | 0.081067 | NM_001136191;NM_015493 | 5'UTR;TSS1500 | chr19:11307495–11308276 |
| RAB32 | cg23267550 | chr6 | North Shore | 0.566886 | 0.35041 | 0.204376 | 0.004754 | 0.216715 | NM_006834 | TSS1500 | chr6:146864481–146865426 |
| PON3 | cg08520743 | chr7 | Island | 0.564437 | 0.344416 | 0.204376 | 0.001623 | 0.052802 | NM_000940 | TSS200 | chr7:95025559–95026122 |
| PON3 | cg08828819 | chr7 | Island | 0.603982 | 0.393397 | 0.204376 | 0.005161 | 0.051629 | NM_000940 | TSS200 | chr7:95025559–95026122 |