Table 2.

Overview of Methyl-Seq data for different tissues. Values shown are the average of 3 independent samples from each tissue. Values shown were obtained from Picard HsMetrics and FastQC analysis. Filtering mentioned in this table involves deduplication of aligned reads.

	Cortex	Hippocampus	Liver
Total aligned reads	81 million	77 million	77 million
Remaining aligned reads after filtering	69 million	51 million	54 million
% of total aligned reads after filtering	85	67	70
% of duplicated sequence from filtered reads	5	5	5
Number of aligned bases after filtering	6.4 billion	4.9 billion	5.0 billion
% of aligned bases in target region after filtering	79	80	82
Mean target coverage from filtered reads	54	43	44
% of target bases with ≥ 10×	75	71	72
Fold enrichment of targeted region	20	20	20
% of targets with zero coverage	23	24	24