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. Author manuscript; available in PMC: 2016 Sep 3.
Published in final edited form as: J Phys Chem B. 2015 Aug 14;119(35):11513–11526. doi: 10.1021/acs.jpcb.5b05467

Figure 3.

Figure 3

Molecular structure of the HIV Reverse Transcriptase that is used in molecular dynamic simulations. The protein-DNA complex is shown in open (grey) and closed (blue) forms. Shown in colored spheres are Magnesium ions. The incoming nucleotide bound to the active site is shown with purple-orange sticks.