Table 1.
Differentially hydroxymethylated (5hmC) regions (DhMRs) for representative genes in hESCs exposed to either 0.8 μM Pb or 1.5 μM Pb. These clusters can be used as potential early 5hmC biomarkers of Pb exposure.
Pb exposure (μM) | Gene | CpG Island | Promoter associated | Effect size | Standard error | P-value | FDR | Number of sites per cluster |
---|---|---|---|---|---|---|---|---|
0.8 | ATP5G1 | chr17:46969695-46970125 | yes | −0.078 | 0.023 | 0.000631 | 0.015042 | 7 |
0.8 | ATPAF1 | chr1:47133674-47134395 | yes | 0.028 | 0.004 | 1.50E-11 | 3.59E-09 | 7 |
0.8 | ETHE1 | chr19:44031127-44031504 | yes | −0.063 | 0.011 | 2.21E-08 | 2.63E-06 | 6 |
0.8 | HSD17B4 | chr5:118788125-118788428 | yes | −0.074 | 0.021 | 0.000459 | 0.011862 | 6 |
0.8 | AGO2 | chr8:141646075-141646514 | yes | −0.073 | 0.014 | 9.40E-08 | 9.27E-06 | 5 |
1.5 | CCND1 | chr11:69451136-69458596 | yes | −0.034 | 0.010 | 0.000912 | 0.013337 | 11 |
1.5 | NUF2 | chr1:163291479-163292021 | yes | −0.148 | 0.043 | 0.000539 | 0.009251 | 5 |
1.5 | RAD51 | chr15:40986871-40987772 | yes | −0.074 | 0.025 | 0.00306 | 0.031238 | 6 |
1.5 | GOLPH3 | chr5:32173598-32174837 | yes | −0.066 | 0.022 | 0.003354 | 0.033245 | 7 |
1.5 | SOD1 | chr21:33031734-33032657 | yes | −0.064 | 0.021 | 0.002905 | 0.030225 | 6 |