Table 3.

Docking result of epitopes with allele structures

Protein	Peptide/epitope	Allele	BE	IME	IE	TorE	VdwE	EE
Nucleocapsid	VPATNSPEL	HLA-B7	−5.07	−12.52	−4.06	7.46	−9.47	−3.05
	SLLNLRSRL	HLA-A2	−1.45	−12.49	−4.94	11.04	−11.75	−0.74
Phosphoprotein	EPYGAAVQL	HLA-B*5102	−1.27	−9.33	−7.82	8.05	−9.57	0.24
	NPADDNDSL	HLA-B*5102	−0.65	−9.3	−0.89	8.65	−8.13	−1.16
Matrix	IAFNLLVYL	HLA-A*0201	−1.98	−11.52	−5.23	9.55	−11.3	−0.22
	FQKNLCFSL	HLA-B*2705	0.35	−10.39	−4.94	10.74	−8.36	−2.03
Fusion	LLFVFGPNL	HLA-A2	−3.11	−11.76	−4.98	8.65	−10.47	−1.29
	KQTELSLDL	HLA-B*2705	2.72	−8.32	−6.03	11.04	−8.14	−0.18
	AQITAGVAL	HLA-B*2705	−0.64	−8.39	−3.49	7.76	−6.6	−1.8
Glycoprotein	RIIGVGEVL	HLA-B*2705	0.36	−9.18	−3.76	9.55	−8.49	−0.69
	EGLLDSKIL	HLA-B*5102	0.05	−10.39	−5.75	10.44	−10.13	−0.26
	ILSAFNTVI	HLA-A2	−1.04	−9.98	−8.09	8.95	−9.94	−0.05
L protein	NPQEKICVL	HLA-B*5102	0.55	−10.49	−5.44	11.04	−10.62	0.14
	FPLWSTEEL	HLA-B*5102	1.31	−8.53	−6.14	9.84	−7.25	−1.28
W protein	DGDVERRNL	HLA-B*5101	2.58	−8.46	−3.91	11.04	−8.34	−0.12
V protein	NPTAVPFTL	HLA-B*2705	−3.13	−10.29	−3.5	7.16	−9.31	−0.98
	DGDVERRNL	HLA-B*5101	2.38	−8.66	−3.8	11.04	−7.75	−0.9
	KEEPPQKRL	HLA-B*2705	−0.26	−11.59	−4.3	11.34	−8.63	−2.97
C protein	PDMDLLQAL	HLA-B*2705	1.76	−8.09	−4.61	9.84	−6.07	−2.02
	MMASILLTL	HLA-B*2705	−2.38	−12.22	−2.54	9.84	−11.46	−0.76

BE binding energy, IME intermolecular energy, IE internal energy, TorE torsional energy, VdwE Vdw-lbDesolv energy, EE electrostatic energy