Table 1.
Gene symbol | Gene title | H3118 Fusion & MAML2 KD/Control | HSY MAML2 KD/Control | Subcelluar localization | Type(s) | Drug(s) | Biomarker application(s) |
---|---|---|---|---|---|---|---|
LINC00473a | long Intergenlc non-protein coding RNA 473 | −37.12 | −1.03 | Unknown | other | ||
Plasma | transmembrane | ||||||
DMBT1a | deleted in malignant brain tumors 1 | −35.73 | 1.16 | Membrane | receptor | ||
secreted | |||||||
STC1a | stanniocalcin 1 | −21.74 | 1.03 | Extracellular | glycoprotein | Diagnosis | |
PDE4B | phosphodiesterase 4B, cAMP-specific | −8.41 | 1.09 | Cytoplasm | enzyme | dyphylline, nitroglycerin | |
transcription | |||||||
RUNX3 | runt-related transcription factor 3 | −4.88 | 1.03 | Nucleus | regulator | Diagnosis | |
Prognosis | |||||||
PTGS1a | prostaglandin-endoperoxide synthase 1 | −3.89 | 1.31 | Cytoplasm | enzyme | acetaminophen, aspirin | Progression |
Prognosis | |||||||
PDE4D | phosphodiesterase 4D, cAMP-specific | −2.93 | 1.05 | Cytoplasm | enzyme | dyphylline, nitroglycerin | Prognosis |
Diagnosis | |||||||
Efficacy | |||||||
CA9a | carbonic anhydrase IX | −2.77 | 1.2 | Nucleus | enzyme | CG250, Methazolamide Tazarotene | Prognosis |
Diagnosis | |||||||
ODC1 | ornithine decarboxylase 1 | −2.54 | −1.06 | Cytoplasm | enzyme | Eflornithine | Efficacy |
AP-12009 | |||||||
TGFB2a | transforming growth factor, beta 2 | −2.48 | 1.21 | Extracellular | growth factor | Lerdelimumab | Efficacy |
Diagnosis | |||||||
AREGa | Amphiregulin | −2.23 | 1.11 | Extracellular | growth factor | Cetuximab, gefitinib | Efficacy |
Prognosis | |||||||
TYMSa | thymidylate synthetase | −2.1 | −1.03 | Nucleus | enzyme | Flucytosine, 5-fluorouracil | Diagnosis |
Efficacy | |||||||
Prognosis | |||||||
CDK6 | cvclin-deDendent kinase 6 | −2.07 | 1.02 | Nucleus | kinase | PD-0332991 | Proanosis |
flavopiridol |
The fold changes of gene expression were shown for fusion-positive MEC H3118 cells with fusion/MAML2 knockdown (KD), and fusion-negative HSY cells with MAML2 KD
a Genes down-regulated in H3118 cells with CREB KD