Table 3.
Differentially-accumulated proteins in Nicotiana benthamiana infected by PSV.
| Peanut stunt virus—infected plants | |||||
|---|---|---|---|---|---|
| Spot | Mascot hit | T-test | Av ratio | Curated name | Other GOs |
| PHOTOSYNTHESIS AND CARBOHYDRATE METABOLIC PROCESS | |||||
| 1412 | gi|77745458|gb|ABB02628.1| | 0.0079 | 1.55 | Triosephosphate isomerase | – |
| 1908 | gi|548526|sp|P35477.1|PLAS2_TOBAC | 0.038 | −1.33 | Plastocyanin | – |
| 939 | gi|460400830|ref|XP_004245935.1| | 0.047 | −1.53 | Phosphoribulokinase, chloroplastic-like | – |
| 1302 | gi|3914940|sp|O20252.1|S17P_SPIOL | 0.043 | −1.68 | Sedoheptulose-1,7-bisphosphatase, chloroplastic | – |
| 620 | gi|460411525|ref|XP_004251160.1| | 0.016 | −1.69 | Rubisco large subunit-binding protein subunit alpha (chaperonin 60 alpha) | Response to stimulus |
| 1129 | gi|460373374|ref|XP_004232495.1| | 0.036 | −1.81 | Ferredoxin–NADP reductase, leaf isozyme, chloroplastic-like | Response to stimulus |
| 1050 | gi|356624532|pdb|3T15|A | 0.027 | −1.86 | Rubisco activase | Response to stimulus |
| 1490 | gi|4930130|pdb|1RPX|A | 0.045 | −2.06 | Ribulose-phosphate 3-epimerase | – |
| 1113 | gi|350536711|ref|NP_001234005.1| | 0.013 | −2.16 | Glyoxisomal malate dehydrogenase | – |
| 686 | gi|460401720|ref|XP_004246365.1| | 0.045 | −2.2 | Fructose-1,6-bisphosphatase, chloroplastic-like | Photosynthesis |
| 706 | gi|460401720|ref|XP_004246365.1| | 0.0079 | −2.23 | Fructose-1,6-bisphosphatase, chloroplastic-like | Photosynthesis |
| 1294 | gi|508726009|gb|EOY17906.1| | 0.023 | −2.23 | Chloroplast sedoheptulose-1,7-bisphosphatase | Response to stimulus |
| 1319 | gi|62865755|gb|AAY17070.1| | 0.03 | −2.38 | Carbonic anhydrase | – |
| 696 | gi|7708648|emb|CAB89998.1| | 0.0064 | −2.41 | ATP synthase CF1 beta subunit | – |
| 802 | gi|460370413|ref|XP_004231047.1| | 0.024 | −2.57 | Glycerate dehydrogenase (hydroxypyruvate reductase), peroxisomal | – |
| 874 | gi|362799991|dbj|BAL41455.1| | 0.013 | −3.1 | Fructose 1,6, bisphosphate aldolase | – |
| 1084 | gi|460373374|ref|XP_004232495.1| | 0.0014 | −3.61 | Ferredoxin–NADP reductase, leaf isozyme, chloroplastic-like | Response to stimulus |
| 1030 | gi|255566555|ref|XP_002524262.1| | 0.024 | −3.98 | Malate dehydrogenase | – |
| CELLULAR AMINO ACID METABOLIC PROCESS | |||||
| 1425 | gi|76870188|gb|DV161180.1|DV161180 | 0.0085 | 2.59 | Arginine biosynthesis bifunctional protein ArgJ | – |
| 256 | gi|8439545|gb|AAF74983.1|AF082893_1 | 0.0034 | 2.07 | Methionine synthase | Response to stimulus |
| 237 | gi|530704703|gb|AGT40326.1| | 0.039 | 1.95 | Methionine synthase | Response to stimulus |
| 797 | gi|190813280|gb|FG200828.1|FG200828 | 0.016 | −1.41 | Aminomethyltransferase, mitochondrial (Glycine cleavage system T protein) | – |
| PROTEIN METABOLIC PROCESS | |||||
| 1540 | gi|357480975|ref|XP_003610773.1| | 0.038 | 2.63 | Proteasome subunit beta type-2-A-like | – |
| 1867 | gi|311124976|gb|HS084903.1|HS084903 | 0.008 | 2.33 | FKBP-type peptidyl-prolyl cis-trans isomerase | – |
| 1828 | gi|28261753|ref|NP_783267.1| | 0.042 | 2.14 | Ribosomal protein L14 | – |
| 477 | gi|255554262|ref|XP_002518171.1| | 0.0033 | 1.85 | Chaperonin CPN60 | Response to stimulus |
| 1845 | gi|94330105|gb|EB683707.1|EB683707 | 0.0058 | 1.84 | FKBP-type peptidyl-prolyl cis-trans isomerase | – |
| 1655 | gi|356536583|ref|XP_003536816.1| | 0.0028 | 1.65 | Peptidyl-prolyl cis-trans isomerase | Response to stimulus |
| 1754 | gi|460407957|ref|XP_004249415.1| | 0.018 | 1.55 | Ubiquitin-conjugating enzyme E2 variant 1D | Response to stimulus |
| 678 | gi|39857235|gb|CK284052.1|CK284052 | 0.01 | 1.41 | Peptidase m20 m25 m40 family protein | – |
| 1096 | gi|460407825|ref|XP_004249350.1| | 0.047 | 1.37 | Cochaperone GrpE family protein | – |
| 620 | gi|460411525|ref|XP_004251160.1| | 0.016 | −1.69 | Rubisco large subunit-binding protein subunit alpha (chaperonin 60 alpha) | Response to stimulus |
| 1657 | gi|460365069|ref|XP_004228428.1| | 0.015 | −3.43 | Peptidyl-prolyl cis-trans isomerase | Response to stimulus |
| RESPONSE TO STIMULUS | |||||
| 388 | gi|460369188|ref|XP_004230445.1| | 0.0029 | 2.73 | Heat shock 70 kda protein | Protein metabolic process, transport |
| 1809 | gi|134616|sp|P27082.2|SODC_NICPL | 0.031 | 1.94 | Superoxide dismutase [Cu-Zn] | – |
| 1204 | gi|460373807|ref|XP_004232705.1| | 0.03 | 1.75 | Lactoylglutathione lyase-like (glyoxalase homolog) | – |
| 424 | gi|460369188|ref|XP_004230445.1| | 0.028 | 1.66 | Heat shock 70 kda protein | Protein metabolic process, transport |
| 1236 | gi|39859660|gb|CK285269.1|CK285269 | 0.0023 | 1.63 | NADH-cytochrome b5 reductase-like protein-like | – |
| 852 | gi|304368145|gb|ADM26718.1| | 0.029 | −2.22 | Glycolate oxidase | – |
| 328 | gi|460369188|ref|XP_004230445.1| | 0.01 | −2.35 | Heat shock 70 kda protein | Protein metabolic process, transport |
| RNA BINDING | |||||
| 1119 | gi|460391607|ref|XP_004241412.1| | 0.038 | 1.69 | Stem-loop (RNA) binding protein of 41 kda chloroplastic-like | Response to stimulus |
| 1929 | gi|47512378|gb|CN747381.1|CN747381 | 0.018 | 1.56 | Ribonucleoprotein | – |
| TRANSPORT | |||||
| 1940 | gi|254629991|gb|FS376425.1|FS376425 | 0.022 | 1.72 | Nuclear transport factor 2-like | Response to stimulus |
Av. ratio cells are colored according to the value (red represents highest, green lowest and yellow intermediate ratios). T-test column is colored according to p-values (lowest values are green, higher ones are paler).