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. 2015 Oct 29;5:15823. doi: 10.1038/srep15823

Table 1. Estimates of genetic diversity and molecular variance for chlorotype sequences.

Regions HS HT GST NST Source of variation d.f. SS VC PV (%) Fixation index θw(×10−3) Ne(×105) Neutrality tests
Fu’s Fs Tajiam’s D
TaD 0.375 (0.086) 0.747 (0.090) 0.498 (0.171) 0.501 (0.196) Among populations 5 14.46 0.28 29.20 FST =0.292* 0.7 6.67 −1.60 (0.220) −1.72 (0.021)
Within populations 42 28.25 0.67 70.80
Total 47 42.71 0.95  
GuD 0.083 (0.083) 0.708 (0.175) 0.882 (0.162) 0.985 (0.022)* Among populations 2 90.75 5.67 99.27 FST =0.993* 0.6 5.75 12.41 (0.998) 1.78 (0.962)
Within populations 21 0.88 0.04 0.73
Total 23 91.63 5.71  
BJ-TD 0.630 (0.062) 0.916 (0.023)* 0.313 (0.066) 0.402 (0.058) Among populations 15 84.42 0.56 33.63 FST =0.336* 1.4 14.48 −12.13 (<.0001) −1.55 (0.035)
Within populations 112 124.75 1.11 66.37
Total 127 209.17 1.68  
QB 0.629 (0.045)* 0.802 (0.056) 0.216 (0.040)* 0.219 (0.009)* Among populations 4 40.35 0.82 19.09 FST =0.191* 0.6 6.37 9.42 (0.993) 1.89 (0.973)
Within populations 35 122.25 3.49 80.91
Total 39 162.60 4.32  
KD-GG 0.179 (0.112) 0.997 (0.047)* 0.821 (0.113) 0.923 (0.078) Among populations 3 105.81 4.39 96.09 FST =0.961* 0. 6 6.67 6.72 (0.980) 1.00 (0.877)
Within populations 28 5.00 0.18 3.91
Total 31 110.81 4.57  
TaD, GuD, BJ-TD, KD-GG and QB versus         Among groups 4 485.59 2.29 48.04 FCT =0.524*        
Among populations within groups 29 335.79 1.30 27.22 FSC =0.753*        
Within populations 238 281.13 1.18 24.74 FST =0.480*
Total 0.527 (0.048)* 0.934 (0.011)* 0.436 (0.041)* 0.612 (0.044)*   271 1102.50 4.77     1.8 18.28 −4.68 (0.192) −1.27 (0.070)

HS, average gene diversity within populations; HT, total gene diversity; GST, interpopulation differentiation; NST, number of substitution types; d.f., degrees of freedom; SS, sum of squares; VC, variance component; FST, correlation within populations relative to total; FSC, correlation of haplotypes within groups relative to the total; FCT, correlation within populations relative to groups; θw, theta per site; Ne, estimates of the effective population size; P-values are enclosed in the parenthesis; *P < 0.05.