Table 5.
Number of genes associated with the 25 general COG functional categories
| Code | Value | % of totala | Value | % of totala | Description |
|---|---|---|---|---|---|
| Strain | Afadé | B237 | |||
| J | 141 | 12.19 | 139 | 12.01 | Translation, ribosomal structure and biogenesis |
| A | 0 | 0.00 | 0 | 0.00 | RNA processing and modification |
| K | 34 | 2.94 | 34 | 2.94 | Transcription |
| L | 50 | 4.32 | 50 | 4.32 | Replication, recombination and repair |
| B | 0 | 0.00 | 0 | 0.00 | Chromatin structure and dynamics |
| D | 9 | 0.78 | 8 | 0.69 | Cell cycle control, Cell division, chromosome partitioning |
| Y | 0 | 0.00 | 0 | 0.00 | Nuclear structure |
| V | 12 | 1.04 | 13 | 1.12 | Defense mechanisms |
| T | 15 | 1.30 | 15 | 1.30 | Signal transduction mechanisms |
| M | 27 | 2.34 | 33 | 2.85 | Cell wall/membrane biogenesis |
| N | 8 | 0.69 | 9 | 0.78 | Cell motility |
| Z | 0 | 0.00 | 0 | 0.00 | Cytoskeleton |
| W | 0 | 0.00 | 0 | 0.00 | Extracellular structures |
| U | 5 | 0.43 | 6 | 0.52 | Intracellular trafficking and secretion |
| O | 26 | 2.25 | 25 | 2.16 | Posttranslational modification, protein turnover, chaperones |
| C | 29 | 2.51 | 28 | 2.42 | Energy production and conversion |
| G | 71 | 6.14 | 70 | 6.05 | Carbohydrate transport and metabolism |
| E | 44 | 3.81 | 42 | 3.63 | Amino acid transport and metabolism |
| F | 32 | 2.77 | 32 | 2.77 | Nucleotide transport and metabolism |
| H | 30 | 2.60 | 29 | 2.51 | Coenzyme transport and metabolism |
| I | 14 | 1.21 | 14 | 1.21 | Lipid transport and metabolism |
| P | 39 | 3.37 | 48 | 4.15 | Inorganic ion transport and metabolism |
| Q | 1 | 0.09 | 1 | 0.09 | Secondary metabolites biosynthesis, transport and catabolism |
| R | 45 | 3.89 | 45 | 3.89 | General function prediction only |
| S | 6 | 0.52 | 6 | 0.52 | Function unknown |
| - | 101 | 8.74 | 105 | 9.08 | Other COG categories |
| - | 442 | 38.24 | 431 | 37.25 | Not in COGs |
aThe total is based on the total number of protein coding genes in the annotated genome