Table 6.
Associated MIGS record
| MIGS-ID | field name | description | description |
|---|---|---|---|
| Strain | Afadé | B237 | |
| MIGS-1 | Submit to INSDC/Trace archives | LAEX00000000 | LAEW00000000 |
| 1.1 | PID | PRJNA272471 | PRJNA272775 |
| 1.2 | Trace Archive | ||
| MIGS-2 | MIGS CHECK LIST TYPE | ||
| MIGS-3 | Project Name | High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237 | High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237 |
| MIGS-4 | Geographic Location | Cameroon | Kenya |
| 4.1 | Latitude | not reported | 01°03′S |
| 4.2 | Longitude | not reported | 37°05′E |
| 4.3 | Depth | na | na |
| 4.4 | Altitude | not reported | 1631 m |
| MIGS-5 | Time of Sample collection | not reported | not reported |
| MIGS-6 | Habitat (EnvO) | Respiratory tract | Respiratory tract |
| 6.1 | temperature | 38.5 | 38.5 |
| 6.2 | pH | 6.5–8.5 | 6.5–8.5 |
| 6.3 | salinity | 0.09 % | 0.09 % |
| 6.4 | chlorophyll | na | na |
| 6.5 | conductivity | na | na |
| 6.6 | light intensity | na | na |
| 6.7 | dissolved organic carbon (DOC) | na | na |
| 6.8 | current | na | na |
| 6.9 | atmospheric data | na | na |
| 6.1 | density | na | na |
| 6.11 | alkalinity | na | na |
| 6.12 | dissolved oxygen | na | na |
| 6.13 | particulate organic carbon (POC) | na | na |
| 6.14 | phosphate | na | na |
| 6.15 | nitrate | na | na |
| 6.16 | sulfates | na | na |
| 6.17 | sulfides | na | na |
| 6.18 | primary production | na | na |
| MIGS-7 | Subspecific genetic lineage | strain | strain |
| MIGS-9 | Number of replicons | 1 | 1 |
| MIGS-10 | Extrachromosomal elements | none | none |
| MIGS-11 | Estimated Size | 1.2 MB | 1.2 Mb |
| MIGS-12 | Reference for biomaterial or Genome report | primary genome report | primary genome report |
| MIGS-13 | Source material identifiers | ||
| MIGS-14 | Known Pathogenicity | Contagious Bovine Pleuropneumonia | Contagious Bovine Pleuropneumonia |
| MIGS-15 | Biotic Relationship | obligate parasite | obligate parasite |
| MIGS-16 | Specific Host | Cattle | Cattle |
| MIGS-17 | Host specificity or range (taxid) | 9903 | 9903 |
| MIGS-18 | Health status of Host | Sick | Sick |
| MIGS-19 | Trophic Level | heterotroph | heterotroph |
| MIGS-22 | Relationship to Oxygen | anaerobic | anaerobic |
| MIGS-23 | Isolation and Growth conditions | optional: reference may be provided if applicable | optional: reference may be provided if applicable |
| MIGS-27 | Nucleic acid preparation | ||
| MIGS-28 | Library construction | ||
| 28.1 | Library size | ||
| 28.2 | Number of reads | ||
| 28.3 | vector | ||
| MIGS-29 | Sequencing method | Illumina Miseq 300PE and PacBio | PacBio |
| MIGS-30 | Assembly | ||
| 30.1 | Assembly method | Celera assembler v7.0 | Celera assembler v7.0 |
| 30.2 | estimated error rate | ||
| 30.3 | method of calculation | ||
| MIGS-31 | Finishing strategy | High-quality draft | High-quality draft |
| 31.1 | Status | ||
| 31.2 | coverage | 25x | 25x |
| 31.3 | contigs | 7 | 1 |
| MIGS-32 | Relevant SOPs | ||
| MIGS-33 | Relevant e-resources |