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. 2015 Oct 28;15:232. doi: 10.1186/s12862-015-0515-x

Fig. 2.

Fig. 2

Gene evolution within the fungal species tree. Shown is the NCBI fungal species tree annotated with inferred gene duplication and lateral transfer events following gene tree/species tree reconciliation. Duplication events marked as paralog/xenolog were ambiguous and not obviously differentiable between being a gene duplication event and a lateral transfer event. The numbered branches within the figure indicate the following duplication and lateral transfer events: 1) Branch: Fungi [URA1 – Paralog(2), URA6 – Paralog(3), URA6 – Paralog/Xenolog(3), YNK1 – Paralog, YNK1 – Paralog/Xenolog], 2) Branch: Rhizophagus irregulare [URA5/10 – Paralog], 3) Branch: Mortierella [URA7 – Paralog, YNK1 – Paralog], 4) Branch: Mucorales [URA7 – Paralog], 5) Mucorineae [URA2 – Paralog, URA7 – Paralog], 6) Branch: Rhizopus microsporus [URA1 – Paralog, URA7 – Paralog, YNK1 – Paralog], 7) Branch: Rhizopus delemar [URA2 – Paralog], 8) Branch: Encephalitozoon intestinalis [URA7 – Paralog], 9) Branch: Pucciniales [URA6 – Paralog], 10) Branch: Filobasidiella/Cryptococcus neoformans species complex [URA5/10 – Paralog(5)], 11) Branch: Ceriporiopsis [URA1 – Paralog], 12) Branch: Fomitopsis pinicola [URA7 – Paralog], 13) Branch: Paxillus involutus [YNK1 – Paralog], 14) Branch: Laccaria bicolor [URA5/10 – Paralog], 15) Branch: Taphrinomycotina [YNK1 – Xenolog], 16) Branch: Millerozyma farinosa [YNK1 – Paralog], 17) Branch: Saccharomycetacea [URA1 – Xenolog, URA5/10 – Paralog(2), URA7 – Paralog], 18) Branch: Pezizomycotina [URA3 – Paralog], 19) Pleosporineae [URA7 – Paralog], 20) Branch: Botryosphaeriaceae [URA3 – Paralog], 21) Branch: Leotiomyceta [URA3 – Paralog/Xenolog, URA7 – Paralog, URA7 – Paralog/Xenolog], 22) Branch: Blumeria graminis f. sp. Hordei DH14 [URA5/10 – Paralog], 23) Branch: Sordariomycetes [URA7 – Paralog], 24) Branch: Hypocreales [URA7 – Paralog], 25) Branch: Fusarium [URA7 – Paralog(3)], 26) Branch: Fusarium verticillioides [URA7 – Paralog], 27) Branch: Fusarium sambucinum species complex [URA7 – Paralog], 28) Branch: Fusarium oxysporum FOSC 3-a [URA7 – Paralog], 29) Branch: Fusarium oxysporum f. sp. Vasinfectum 25433 [URA7 – Paralog]. An expandable pdf version of Fig. 2 is also found within the supplementary materials