Table 5.
Genes regulated by methylation in breast cancer
| Gene | Score |
|---|---|
| DQX1 | 0.6993144 |
| IRS2 | 0.6920052 |
| GPSM3 | 0.6698851 |
| FOXC1 † | 0.6428115 |
| PSMB9 | 0.6242704 |
| HOXC10 † | 0.6233063 |
| NDRG2 | 0.6230449 |
| MAPT | 0.6078226 |
| STC2 | 0.6064161 |
| ZNF502 † | 0.5859661 |
| PTPRCAP | 0.5834326 |
| SCAND3 | 0.5832075 |
| SLC1A4 | 0.5801594 |
| TAP1 | 0.5763637 |
| DBNDD2 | 0.5650488 |
| OTX1 † | 0.5648463 |
| TCF7 † | 0.5618545 |
| LY6G6C | 0.5618097 |
| FERMT3 | 0.5602340 |
| ZIC4 † | 0.5595657 |
| HLA-B | 0.5565054 |
| GDF9 | 0.5517472 |
| SOX9 † | 0.5513052 |
| CELSR1 | 0.5502329 |
| SYS1-DBNDD2 | 0.5490248 |
| HLA-E | 0.5490118 |
| CYP1B1 | 0.5411610 |
| RUNX3 † | 0.5406337 |
| KIAA1949 | 0.5379938 |
| RIPK4 | 0.5313998 |
| TPPP2 | 0.5305543 |
| HLA-F | 0.5304392 |
| PPP1R3C | 0.5293955 |
| HOXB5 † | 0.5287862 |
| CELSR3 | 0.5272638 |
| B3GNT5 | 0.5259399 |
| ME3 | 0.5244800 |
| TMC8 | 0.5231671 |
| AIF1 | 0.5223122 |
| SLC39A6 | 0.5217374 |
| HOXC11 † | 0.5122936 |
| ERBB2 | 0.5055868 |
| TBC1D10C | 0.5038227 |
| SIM2 | 0.5030521 |
| CAMK2N1 | 0.5022371 |
| RGMA | 0.4996740 |
| LOC100132215 | 0.4979089 |
| PAX6 † | 0.4976355 |
| VANGL2 | 0.4960224 |
| DDHD2 | 0.4879724 |
Gene: Top scoring genes ranked by the predictive power of methylation to predict gene expression variation. Score: R 2 score associated. Transcription factors are highlighted with a †