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. 2015 Oct 29;10(10):e0141409. doi: 10.1371/journal.pone.0141409

Table 1. Binding free energies calculated by MM-GBSA method (kcal·mol−1).

Energy a PMI+MDMX pDI+MDMX WK23+MDMX WW9+MDMX
ΔEele -136.2±7.6 b -141.9±8.4 -32.9±6.4 -53.1±6.8
ΔEvdw -64.8±2.1 -55.1±2.1 -36.0±1.9 -37.1±1.4
ΔGnonpol -9.5±0.1 -8.5±0.3 -5.1±0.1 -5.5±0.2
ΔGpol 158.3±8.7 161.9±10.2 46.7±6.8 67.1±7.2
-TΔS 38.9±1.2 32.9±1.6 18.9±1.1 19.7±1.5
ΔGbind -13.3 -10.7 -8.4 -8.9±
ΔGexp -10.1 -8.5 -6.1 -6.8±

a Component: ΔEele: electrostatic energy in the gas phase; ΔEvdw: van der Waals energy; ΔGnopol: non-polar solvation energy; ΔGpol: polar solvation energy; -TΔS: total entropy contribution; ΔGbind = ΔGgas+sol−TΔS.

b The signs “±” represent standard errors determined by using std=(xix¯)2N1.