. 2015 Oct 29;10(10):e0141329. doi: 10.1371/journal.pone.0141329

Table 1. List of genes present in the Dianthus chloroplast genome.

Category	Gene group	Gene name
Self-replication	Ribosomal RNA genes	rrn4.5 ^a	rrn5 ^a	rrn16 ^a	rrn23 ^a
	Transfer RNA genes	trnA-UGC ^a ^, ^b	trnC-GCA	trnD-GUC	trnE-UUC	trnF-GAA
		trnfM-CAU	trnG-GCC	trnG-UCC ^b	trnH-GUG	trnI-CAU ^a
		trnI-GAU ^a ^, ^b	trnK-UUU ^b	trnL-CAA ^a	trnL-UAA ^b	trnL-UAG
		trnM-CAU	trnN-GUU ^a	trnP-UGG	trnQ-UUG	trnR-ACG ^a
		trnR-UCU	trnS-GCU	trnS-GGA	trnS-UGA	trnT-GGU
		trnT-UGU	trnV-GAC ^a	trnV-UAC ^b	trnW-CCA	trnY-GUA
	Small subunit of ribosome	rps2	rps3	rps4	rps7 ^a	rps8
		rps11	rps12 ^a ^, ^c ^, ^d	rps14	rps15	rps16 ^b
		rps18	rps19
	Large subunit of ribosome	rpl2 ^a	rpl14	rpl16 ^b	rpl20	rpl22
		rpl23 ^e	rpl32	rpl33	rpl36
	DNA-dependent RNA polymerase	rpoA	rpoB	rpoC1 ^b	rpoC2
	Translational initiation factor	infA ^e
Genes for photosynthesis	Subunits of photosystem I	psaA	psaB	psaC	psaI	psaJ
		ycf3 ^c	ycf4
	Subunits of photosystem II	psbA	psbB	psbC	psbD	psbE
		psbF	psbH	psbI	psbJ	psbK
		psbL	psbM	psbN	psbT	psbZ
	Subunits of cytochrome	petA	petB ^b	petD ^b	petG	petL
		petN
	Subunits of ATP synthase	atpA	atpB	atpE	atpF ^b	atpH
		atpI
	Large subunit of Rubisco	rbcL
	Subunits of NADH dehydrogenase	ndhA ^b	ndhB ^a ^, ^b	ndhC	ndhD	ndhE
		ndhF	ndhG	ndhH	ndhI	ndhJ
		ndhK
Other genes	Maturase	matK
	Envelope membrane protein	cemA
	Subunit of acetyl-CoA	accD
	C-type cytochrome synthesis gene	ccsA
	Protease	clpP ^c
	Component of TIC complex	ycf1 ^a

^a—Two gene copies in IRs;

^b—Gene containing a single intron;

^c—Gene containing two introns;

^d—Gene divided into two independent transcription units;

^e—Pseudogene.