Table 2. Location and length of intron-containing genes in the Dianthus chloroplast genome.
Gene* | Location | Exon I | Intron I | Exon II | Intron II | Exon III |
---|---|---|---|---|---|---|
Nucleotides in base pairs | ||||||
atpF | LSC | 144 | 690 | 410 | ||
clpP | LSC | 69 | 857 | 291 | 567 | 228 |
ndhA | SSC | 552 | 1049 | 540 | ||
ndhB | IR | 777 | 663 | 756 | ||
petB | LSC | 6 | 712 | 642 | ||
petD | LSC | 7 | 755 | 477 | ||
rps12 # | LSC | 114 | -- | 232 | 538 | 26 |
rpl16 | LSC | 9 | 912 | 402 | ||
rpoC1 | LSC | 432 | 736 | 1620 | ||
rps16 | LSC | 40 | 837 | 227 | ||
trnG-UCC | IR | 38 | 808 | 35 | ||
trnA-UGC | IR | 23 | 695 | 48 | ||
trnI-GAU | IR | 42 | 913 | 35 | ||
trnK-UUU | LSC | 37 | 2424 | 35 | ||
trnL-UAA | LSC | 37 | 541 | 50 | ||
trnV-UAC | LSC | 39 | 605 | 37 | ||
ycf3 | LSC | 129 | 756 | 228 | 809 | 153 |
*Identical duplicate gene containing introns in the IR region are not included.
# The rps12 is a trans-spliced gene with the 5′ end located in the LSC region and duplicated in the 3′ end in the IR regions.