Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1993 Apr 15;90(8):3172–3176. doi: 10.1073/pnas.90.8.3172

Dating the genetic bottleneck of the African cheetah.

M Menotti-Raymond 1, S J O'Brien 1
PMCID: PMC46261  PMID: 8475057

Abstract

The cheetah is unusual among fields in exhibiting near genetic uniformity at a variety of loci previously screened to measure population genetic diversity. It has been hypothesized that a demographic crash or population bottleneck in the recent history of the species is causal to the observed monomorphic profiles for nuclear coding loci. The timing of a bottleneck is difficult to assess, but certain aspects of the cheetah's natural history suggest it may have occurred near the end of the last ice age (late Pleistocene, approximately 10,000 years ago), when a remarkable extinction of large vertebrates occurred on several continents. To further define the timing of such a bottleneck, the character of genetic diversity for two rapidly evolving DNA sequences, mitochondrial DNA and hypervariable minisatellite loci, was examined. Moderate levels of genetic diversity were observed for both of these indices in surveys of two cheetah subspecies, one from South Africa and one from East Africa. Back calculation from the extent of accumulation of DNA diversity based on observed mutation rates for VNTR (variable number of tandem repeats) loci and mitochondrial DNA supports a hypothesis of an ancient Pleistocene bottleneck that rendered the cheetah depauperate in genetic variation for nuclear coding loci but would allow sufficient time for partial reconstitution of more rapidly evolving genomic DNA segments.

Full text

PDF
3172

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Adams D. B. The cheetah: native american. Science. 1979 Sep 14;205(4411):1155–1158. doi: 10.1126/science.205.4411.1155. [DOI] [PubMed] [Google Scholar]
  2. Avise J. C. Ten unorthodox perspectives on evolution prompted by comparative population genetic findings on mitochondrial DNA. Annu Rev Genet. 1991;25:45–69. doi: 10.1146/annurev.ge.25.120191.000401. [DOI] [PubMed] [Google Scholar]
  3. Baker C. S., Palumbi S. R., Lambertsen R. H., Weinrich M. T., Calambokidis J., O'Brien S. J. Influence of seasonal migration on geographic distribution of mitochondrial DNA haplotypes in humpback whales. Nature. 1990 Mar 15;344(6263):238–240. doi: 10.1038/344238a0. [DOI] [PubMed] [Google Scholar]
  4. Church G. M., Gilbert W. Genomic sequencing. Proc Natl Acad Sci U S A. 1984 Apr;81(7):1991–1995. doi: 10.1073/pnas.81.7.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Georges M., Lathrop M., Hilbert P., Marcotte A., Schwers A., Swillens S., Vassart G., Hanset R. On the use of DNA fingerprints for linkage studies in cattle. Genomics. 1990 Mar;6(3):461–474. doi: 10.1016/0888-7543(90)90476-b. [DOI] [PubMed] [Google Scholar]
  6. Gilbert D. A., Lehman N., O'Brien S. J., Wayne R. K. Genetic fingerprinting reflects population differentiation in the California Channel Island fox. Nature. 1990 Apr 19;344(6268):764–767. doi: 10.1038/344764a0. [DOI] [PubMed] [Google Scholar]
  7. Gilbert D. A., Packer C., Pusey A. E., Stephens J. C., O'Brien S. J. Analytical DNA fingerprinting in lions: parentage, genetic diversity, and kinship. J Hered. 1991 Sep-Oct;82(5):378–386. doi: 10.1093/oxfordjournals.jhered.a111107. [DOI] [PubMed] [Google Scholar]
  8. Gilbert D. A., Reid Y. A., Gail M. H., Pee D., White C., Hay R. J., O'Brien S. J. Application of DNA fingerprints for cell-line individualization. Am J Hum Genet. 1990 Sep;47(3):499–514. [PMC free article] [PubMed] [Google Scholar]
  9. Jeffreys A. J., Royle N. J., Wilson V., Wong Z. Spontaneous mutation rates to new length alleles at tandem-repetitive hypervariable loci in human DNA. Nature. 1988 Mar 17;332(6161):278–281. doi: 10.1038/332278a0. [DOI] [PubMed] [Google Scholar]
  10. Jeffreys A. J., Turner M., Debenham P. The efficiency of multilocus DNA fingerprint probes for individualization and establishment of family relationships, determined from extensive casework. Am J Hum Genet. 1991 May;48(5):824–840. [PMC free article] [PubMed] [Google Scholar]
  11. Krawczak M., Bockel B. DNA-fingerprinting: a short note on mutation rates. Hum Genet. 1991 Sep;87(5):632–633. doi: 10.1007/BF00209030. [DOI] [PubMed] [Google Scholar]
  12. Levi M. H., Pasculle A. W., Dowling J. N. Role of the alveolar macrophage in host defense and immunity to Legionella micdadei pneumonia in the guinea pig. Microb Pathog. 1987 Apr;2(4):269–282. doi: 10.1016/0882-4010(87)90125-2. [DOI] [PubMed] [Google Scholar]
  13. Marshall L. G., Webb S. D., Sepkoski J. J., Jr, Raup D. M. Mammalian evolution and the great american interchange. Science. 1982 Mar 12;215(4538):1351–1357. doi: 10.1126/science.215.4538.1351. [DOI] [PubMed] [Google Scholar]
  14. Martin L. D., Gilbert B. M., Adams D. B. A cheetah-like cat in the north american pleistocene. Science. 1977 Mar 11;195(4282):981–982. doi: 10.1126/science.195.4282.981. [DOI] [PubMed] [Google Scholar]
  15. Nei M., Tajima F. DNA polymorphism detectable by restriction endonucleases. Genetics. 1981 Jan;97(1):145–163. doi: 10.1093/genetics/97.1.145. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Nürnberg P., Roewer L., Neitzel H., Sperling K., Pöpperl A., Hundrieser J., Pöche H., Epplen C., Zischler H., Epplen J. T. DNA fingerprinting with the oligonucleotide probe (CAC)5/(GTG)5: somatic stability and germline mutations. Hum Genet. 1989 Dec;84(1):75–78. doi: 10.1007/BF00210676. [DOI] [PubMed] [Google Scholar]
  17. O'Brien S. J., Roelke M. E., Marker L., Newman A., Winkler C. A., Meltzer D., Colly L., Evermann J. F., Bush M., Wildt D. E. Genetic basis for species vulnerability in the cheetah. Science. 1985 Mar 22;227(4693):1428–1434. doi: 10.1126/science.2983425. [DOI] [PubMed] [Google Scholar]
  18. O'Brien S. J., Wildt D. E., Bush M., Caro T. M., FitzGibbon C., Aggundey I., Leakey R. E. East African cheetahs: evidence for two population bottlenecks? Proc Natl Acad Sci U S A. 1987 Jan;84(2):508–511. doi: 10.1073/pnas.84.2.508. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. O'brien S. J., Wildt D. E., Goldman D., Merril C. R., Bush M. The cheetah is depauperate in genetic variation. Science. 1983 Jul 29;221(4609):459–462. doi: 10.1126/science.221.4609.459. [DOI] [PubMed] [Google Scholar]
  20. Reeve H. K., Westneat D. F., Noon W. A., Sherman P. W., Aquadro C. F. DNA "fingerprinting" reveals high levels of inbreeding in colonies of the eusocial naked mole-rat. Proc Natl Acad Sci U S A. 1990 Apr;87(7):2496–2500. doi: 10.1073/pnas.87.7.2496. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Stephens J. C., Gilbert D. A., Yuhki N., O'Brien S. J. Estimation of heterozygosity for single-probe multilocus DNA fingerprints. Mol Biol Evol. 1992 Jul;9(4):729–743. doi: 10.1093/oxfordjournals.molbev.a040755. [DOI] [PubMed] [Google Scholar]
  22. Wayne R. K., Meyer A., Lehman N., Van Valkenburgh B., Kat P. W., Fuller T. K., Girman D., O'Brien S. J. Large sequence divergence among mitochondrial DNA genotypes within populations of eastern African black-backed jackals. Proc Natl Acad Sci U S A. 1990 Mar;87(5):1772–1776. doi: 10.1073/pnas.87.5.1772. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Wildt D. E., O'Brien S. J., Howard J. G., Caro T. M., Roelke M. E., Brown J. L., Bush M. Similarity in ejaculate-endocrine characteristics in captive versus free-ranging cheetahs of two subspecies. Biol Reprod. 1987 Mar;36(2):351–360. doi: 10.1095/biolreprod36.2.351. [DOI] [PubMed] [Google Scholar]
  24. Yuhki N., O'Brien S. J. DNA variation of the mammalian major histocompatibility complex reflects genomic diversity and population history. Proc Natl Acad Sci U S A. 1990 Jan;87(2):836–840. doi: 10.1073/pnas.87.2.836. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES