Table 3. Volume of Active Site (A3) of Key GRY53/7HC–Ligand Structures.
GRY53/7HC–croconate complexes |
GRY53/7HC–glucuronate complexes |
||
---|---|---|---|
structure | volume of active site (Å3) | structure | volume of active site (Å3) |
LowEa | 124 | LowEa | 142 |
time avgb | 104 | time avgb | 241 |
croconate 1c | 99 | glucuronate 1c | 154 |
croconate 2c | 96 | glucuronate 2c | 124 |
croconate 3c | 135 | glucuronate 3c | 198 |
glucuronate 4c | 101 |
Low energy structure from the MD simulation.
Time averaged structure from the MD simulation.
Representative clustered forms of GRY53/7HC–ligand complexes. The smaller volume of the GRY53/7HC–croconate complexes suggests a more closed active site, while the greater volume of the GRY53/7HC–glucuronate complexes suggests a more open active site.