Table 2. Summary of results from two additional CKO projects using the optimized liquid culture CoSBR protocol.
Gene | BAC clone ID | KanR wells w/loxP | Retrievals w/lox | Retrievals with error-free loxP |
---|---|---|---|---|
Cdh11 | RP23–60C23 | 34/95 (36%) | 6/21 (29%) | 6/6 (100%) |
RP23–35E14 | 2/95 (2%) | n.d. | n.d. | |
S100A8 | RP23–6E18 | 60/95 (63%) | 6/17 (35%) | 5/6 (83%) |
RP23–189H20/229K18 | 51/95 (54%) | n.d. | n.d. |
One or more BAC clones were used per project along with a matching lagging-strand oligo. Experiments were done in 96-well plates. Retrieval minipreps were analyzed for presence of loxP and loxP-positive CKO vectors were subsequently sequenced. n.d., not done.