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. 2015 Sep 22;43(19):9133–9146. doi: 10.1093/nar/gkv910

Table 1. TP53 DNA sequences used for molecular dynamics simulations (adducted guanine underlined). Sequences were determined to be hotspots in cancers based on their prevalence in the IARC TP53 database, or the UMD TP53 database (5,33).

CODON SEQUENCE HOTSPOT STATUS (across cancers) No. observed G:C>T:A in lung cancer * P-value **
157 CCCGCGTCCGC Lung 27 1 x 10−27
158 CGTCCGCGCCA Lung 35 4 x 10−39
245 TGGGCGGCATG Many 9 4 x 10−6
248 GAACCGGAGGC Many 24 2 x 10−23
273 GGTGCGTGTTT Many 36 1 x 10−40
282 AGACCGGCGCA Many 1 (NS) 0.362
170 ATGACGGAGGT None 0 0.303
186 ATAGCGATTGT None 0 0.303
213 TTTTCGACATA Breast 2 (1 NS) 0.216
267 GGGACGGAACA None 0 0.303
290 TCTCCGCAAGA None 2 (1 NS) 0.216

*Total number of observed G:C>T:A substitutions observed in the IARC TP53 database for codons 5–8 where smoking status was known.

**P-value denotes for each codon whether the number of G:C>T:A substitutions at the mutable guanine formed a significant mutation hotspot in lung cancer.

NS = Non-smoker.