Table 1. TP53 DNA sequences used for molecular dynamics simulations (adducted guanine underlined). Sequences were determined to be hotspots in cancers based on their prevalence in the IARC TP53 database, or the UMD TP53 database (5,33).
CODON | SEQUENCE | HOTSPOT STATUS (across cancers) | No. observed G:C>T:A in lung cancer * | P-value ** |
---|---|---|---|---|
157 | CCCGCGTCCGC | Lung | 27 | 1 x 10−27 |
158 | CGTCCGCGCCA | Lung | 35 | 4 x 10−39 |
245 | TGGGCGGCATG | Many | 9 | 4 x 10−6 |
248 | GAACCGGAGGC | Many | 24 | 2 x 10−23 |
273 | GGTGCGTGTTT | Many | 36 | 1 x 10−40 |
282 | AGACCGGCGCA | Many | 1 (NS) | 0.362 |
170 | ATGACGGAGGT | None | 0 | 0.303 |
186 | ATAGCGATTGT | None | 0 | 0.303 |
213 | TTTTCGACATA | Breast | 2 (1 NS) | 0.216 |
267 | GGGACGGAACA | None | 0 | 0.303 |
290 | TCTCCGCAAGA | None | 2 (1 NS) | 0.216 |
*Total number of observed G:C>T:A substitutions observed in the IARC TP53 database for codons 5–8 where smoking status was known.
**P-value denotes for each codon whether the number of G:C>T:A substitutions at the mutable guanine formed a significant mutation hotspot in lung cancer.
NS = Non-smoker.