FIGURE 2.

Read mapping for the locus lmo1705 under extracellular and intracellular growth conditions generated with ReadXplorer (Hilker et al., 2014). The three tracks represent genome annotation of this locus, read mapping for extra- and for intracellular conditions (in top–down order). For each track, genes on the plus strand (respectively their transcripts) are depicted above the central line, while minus strand genes (or their transcripts) are shown below. For the two read mapping tracks (extra- and intracellular growth condition), a detailed alignment up to a depth of 35 reads and a coverage plot is provided, too. The color thereby indicates whether reads are uniquely mapped and match the reference perfectly (green) or whether they map uniquely, but with mismatches (yellow). The read mapping indicates a strong increase in antisense transcripts for lmo1705 during intracellular growth.