Table 2.
The Gene-Chip and ChIP-seq agreement
| Affymetrix ID | Official gene name | FC Gene Chip | FC Chip-Seq | Official gene symbol, full description |
|---|---|---|---|---|
| 17550548 | Acsm2 | 2.1 | 1.2 | Acyl-coa synthetase medium-chain family member 2 |
| 17205319 | Cox18 | 1.8 | 1.1 | cytochrome c oxidase assembly protein 18 |
| 17200441 | Dhrs1 | 1.7 | 1.1 | Dehydrogenase/reductase (SDR family) member 1 |
| 17205257 | Gbf1 | 1.6 | 1.2 | Golgi-specific brefeldin A-resistance factor 1 |
| 17202563 | MrpL27 | 1.5 | 1.2 | Mitochondrial ribosomal protein L27 |
| 17205437 | Arfgef1 | 1.6 | 1.2 | ADP-ribosylation factor guanine nucleotide-exchange factor 1 |
| 17201149 | Xpo7 | 1.5 | 1.4 | Exportin 7; similar to Ran-binding protein 16 |
| 17308165 | Entpd4 | 0.4 | 0.6 | Ectonucleoside triphosphate diphosphohydrolase 4 |
| 17449641 | G3bp2 | 1.5 | 1.2 | Gtpase activating protein (SH3 domain) binding protein 2 |
| 17308149 | Gm16677 | 0.6 | 0.6 | Predicted gene 16677 |
| 17548436 | Gm17019 | 2.1 | 3.7 | Predicted gene 17019 |
| 17203369 | Sar1a | 1.6 | 1.1 | SAR1 gene homolog A (S. Cerevisiae) |
| 17515315 | Ldlr | 0.7 | 0.8 | Low density lipoprotein receptor |
| 17500195 | Star | 0.6 | 0.7 | Steroidogenic acute regulatory protein |
| 17201763 | Nmt1 | 1.6 | 1.1 | N-myristoyltransferase 1 |
| 17203277 | Psma1 | 1.5 | 1.1 | Proteasome (prosome, macropain) subunit, alpha type 1 |
| 17453132 | Psph | 0.6 | 0.9 | Phosphoserine phosphatase |
| 17323063 | Rrn3 | 1.6 | 1.1 | RRN3 RNA polymerase I transcription factor homolog (yeast) |
| 17445634 | Gm9758 | 1.8 | 3.1 | Spermatogenesis associated glutamate (E)-rich protein 4e |
| 17446524 | Speer4b | 1.6 | 1.4 | Spermatogenesis associated glutamate (E)-rich protein 4b |
| 17445689 | Speer4c | 1.5 | 1.5 | Spermatogenesis associated glutamate (E)-rich protein 4e |
| 17445673 | Speer4e | 2 | 6 | Spermatogenesis associated glutamate (E)-rich protein 4e |
| 17434884 | Speer7-ps1 | 2.1 | 6.2 | Spermatogenesis associated glutamate (E)-rich protein 7, pseudogene 1 |
| 17434864 | Speer8-ps1 | 1.8 | 2.4 | Spermatogenesis associated glutamate (E)-rich protein 8, pseudogene 1 |
| 17529481 | Tbx18 | 0.6 | 0.8 | T-box18 |
| 17201539 | Kif18b | 1.6 | 1.1 | Kinesin family member 18B |
| 17401007 | Trim45 | 1.9 | 2.4 | Tripartite motif-containing 45 |
| 17535269 | 1700020N15Rik | 0.6 | 1.2 | RIKEN cdna 1700020 N15 gene |
| 17201329 | Ccdc103 | 0.6 | 1.2 | Coiled-coil domain containing 103 |
| 17207313 | Cpsf7 | 0.7 | 1.2 | Cleavage and polyadenylation specific factor 7 |
| 17201293 | Eftud2 | 0.6 | 1.2 | Elongation factor Tu GTP binding domain containing 2 |
| 17206471 | Eif5 | 0.6 | 1.2 | Similar to Eukaryotic translation initiation factor 5 |
| 17448749 | Fryl | 0.6 | 1.2 | Furry homolog-like (Drosophila) |
| 17208347 | Hdac5 | 1.5 | 1 | Histone deacetylase 5 |
| 17538773 | Huwe1 | 0.6 | 1 | HECT, UBA and WWE domain containing 1 |
| 17546762 | Mid1 | 0.6 | 1.5 | Similar to midline 1 |
| 17207105 | Pkd1 | 0.7 | 1 | Polycystic kidney disease 1 homolog |
| 17202313 | Psap | 1.7 | 1 | Prosaposin |
| 17204631 | Smim7 | 1.8 | 0.9 | Small integral membrane protein 7 |
| 17438319 | Tmem165 | 0.6 | 1.1 | Transmembrane protein 165 |
| 17392600 | 9230104L09Rik | 0.5 | ND | RIKEN cdna 9230104 L09 gene |
| 17290163 | Ccl28 | 1.6 | ND | Chemokine (C-C motif) ligand 28 |
| 17413061 | Gm5859 | 0.5 | ND | Similar to 4933409K07Rik protein |
| 17477347 | Klk1b22 | 1.8 | ND | Kallikrein 1-related peptidase b22 |
| 17233226 | Lilrb4 | 0.6 | ND | Glycoprotein 49 A; leukocyte immunoglobulin-like receptor, subfamily B, member 4 |
| 17532649 | Nd6 | 2.3 | ND | NADH dehydrogenase subunit 6 |