Table 2.
Differentially expressed miRNAs in response to 5 % linseed oil or 5 % safflower oil treatments
| miRNA | Linseed treatment | Safflower treatment | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Log2FC1 | FC2 | logCPM3 | P-value | FDR4 | Log2FC | FC | logCPM | P-value | FDR | |
| bta-miR-148b | 0.365 | 1.288 | 12.16 | 0.001 | 0.028 | 0.604 | 1.520 | 12.31 | 0.000 | 0.001 |
| bta-miR-199a-3p | 0.558 | 1.472 | 12.05 | 0.000 | 0.000 | 0.857 | 1.811 | 12.11 | 0.000 | 0.000 |
| bta-miR-199c | 0.589 | 1.504 | 7.93 | 0.000 | 0.000 | 0.984 | 1.977 | 7.99 | 0.000 | 0.000 |
| bta-miR-21-5p | 0.352 | 1.277 | 15.46 | 0.001 | 0.031 | 0.653 | 1.572 | 15.36 | 0.000 | 0.000 |
| bta-miR-378 | 0.414 | 1.332 | 8.76 | 0.001 | 0.031 | 0.736 | 1.666 | 8.85 | 0.000 | 0.000 |
| bta-miR-98 | 0.505 | 1.419 | 8.98 | 0.000 | 0.002 | 0.796 | 1.736 | 8.95 | 0.000 | 0.000 |
| bta-miR-152 | - | - | - | - | - | 0.551 | 1.465 | 10.62 | 0.000 | 0.002 |
| bta-miR-16a | - | - | - | - | - | 0.529 | 1.443 | 8.60 | 0.001 | 0.011 |
| bta-miR-28 | - | - | - | - | - | 0.525 | 1.439 | 9.59 | 0.000 | 0.004 |
| bta-miR-34a | - | - | - | - | - | 0.940 | 1.919 | 5.87 | 0.001 | 0.011 |
| bta-miR-145 | - | - | - | - | - | −0.473 | −1.388 | 13.29 | 0.002 | 0.029 |
| bta-miR-99a-5p | - | - | - | - | - | −0.487 | −1.402 | 15.32 | 0.000 | 0.004 |
| bta-miR-196a | 0.444 | 1.361 | 6.07 | 0.002 | 0.050 | - | - | - | - | - |
| bta-miR-23b-3p | 0.401 | 1.320 | 10.77 | 0.001 | 0.031 | - | - | - | - | - |
| bta-miR-3431 | 0.532 | 1.446 | 6.36 | 0.002 | 0.049 | - | - | - | - | - |
| bta-miR-4286 | 0.787 | 1.725 | 4.18 | 0.000 | 0.000 | - | - | - | - | - |
| bta-miR-885 | 0.782 | 1.719 | 4.80 | 0.001 | 0.035 | - | - | - | - | - |
| bta-miR-200a | −0.470 | −1.385 | 13.85 | 0.000 | 0.001 | −0.521 | −1.435 | 13.99 | 0.000 | 0.000 |
| bta-miR-335 | −0.581 | −1.496 | 6.95 | 0.000 | 0.020 | - | - | - | - | - |
| bta-miR-2299-5p | −0.890 | −1.853 | 3.76 | 0.001 | 0.028 | - | - | - | - | - |
| bta-miR-125b | - | - | - | - | - | −0.563 | −1.477 | 13.09 | 0.001 | 0.016 |
| bta-miR-99b | - | - | - | - | - | −0.573 | −1.488 | 11.43 | 0.001 | 0.012 |
| bta-miR-125a | - | - | - | - | - | −0.574 | −1.489 | 12.22 | 0.002 | 0.032 |
| bta-miR-96 | - | - | - | - | - | −0.606 | −1.522 | 11.60 | 0.000 | 0.000 |
| bta-miR-484 | - | - | - | - | - | −0.709 | −1.635 | 7.79 | 0.000 | 0.005 |
| bta-miR-1388-5p | - | - | - | - | - | −0.749 | −1.681 | 6.81 | 0.000 | 0.006 |
| bta-miR-342 | - | - | - | - | - | −0.830 | −1.778 | 8.75 | 0.000 | 0.004 |
| bta-miR-4863 | - | - | - | - | - | −1.754 | −3.373 | 7.94 | 0.000 | 0.000 |
| bta-miR-1271 | - | - | - | - | - | −2.262 | −4.797 | 6.61 | 0.000 | 0.009 |
1Log2FC: log2 fold change; 2FC: fold change; 3logCPM: log2-counts per million; 4Benjaminin Hochberg FDR p-values.
The miRNAs in bold are among core differentially expressed miRNAs which were found in both treatments.
bta-miR-486 was also found to be differentially expressed at day + 7 as compared to day-14 in safflower treatment