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Search result comparison of ProLuCID, SEQUEST, and Comet. Triplicates of Hela sample were searched against the same protein database. Search results were filtered with the same DTASelect parameters. The results were averaged from triplicates.
| Algorithm | Protein count | Peptide count | Spectrum count |
|---|---|---|---|
| SEQUEST | 3798 | 28075 | 48217 |
| Comet | 3921 | 29810 | 51202 |
| ProLuCID | 3973 | 31165 | 53797 |
